KEGG   Cyphomyrmex costatus: 108780934
Entry
108780934         CDS       T11118                                 
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
ccoa  Cyphomyrmex costatus
Pathway
ccoa03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:ccoa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    108780934
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ccoa03021]
    108780934
   03036 Chromosome and associated proteins [BR:ccoa03036]
    108780934
Transcription machinery [BR:ccoa03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     108780934
   Coactivators
    SAGA/TFTC/STAGA complex
     108780934
Chromosome and associated proteins [BR:ccoa03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     108780934
    STAGA complex
     108780934
    TFTC complex
     108780934
    SAGA complex
     108780934
    SLIK complex
     108780934
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 EIF3I TFIID_NTD2 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_IFT122_1st WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_TEP1_C ANAPC4_WD40 Beta-prop_RIG_2nd WDR90_beta-prop_4th Beta-prop_SCAP NBCH_WD40 Beta-prop_IFT140_1st Beta-prop_WDR19_1st Beta-prop_HPS5 Beta-prop_Vps41 WD40_like Beta-prop_DCAF4 Beta-prop_SPT8 Beta-prop_Nup120_160 Beta-prop_EIPR1 RMC1_N Beta-prop_DCAF12 Mala_s_1-like eIF2A Beta-prop_WDR35_TULP_N Cytochrom_D1
Other DBs
NCBI-GeneID: 108780934
NCBI-ProteinID: XP_018404283
LinkDB
Position
Unknown
AA seq 587 aa
MKMKRMKSDVISATIESYLKRRHYQTHDYRKGDQLFCQNSDQTTLNATAECGTSQDNSIV
FSAITIDIIAADQAYQRLKKWMSVALNEKLRIELQGLLYPIFCHLYLEMLHAGSRQAAIQ
FLKTYQNEFMSDTEKDFLEELSSVFSVQDIELRPLVNAFRTRKYKVDLSESAHICLRQYL
TKYGHIILLQIINTHITIIRKADSPQMDGEVLEERSQRYEASINGHVEQPSGTGIDREMR
ELQEAIRLIQHNSHQALRLFTVKNAIENASCGLIAPKMDKLAVGFSTAEIRLWAIGDTVL
VKKNDKQCVPSTCDISPFYKFNEQESTIRSEAGAIVLRGHTDVVHDLRFIPEVDILLSVS
SDKDMRAWKLNNYSCTAIYSGHSYPIWCMDTSVFNLYIATGSHDRTAKLWSLDRTFPLRI
FAGHFLDVNCIKFHPNARYLATGSADKTVRLWSKDDGNLLRVYVGAQSTIYTLAFSPDGK
YLAAAGDDKSIFIWDLATNGLLTELKGHKDTIMNVDWSLDNQYIASASLDGIVRLWSTQD
FIKTLNGGSSSIMLQSEAPQIYSTYCSSILSLNYYKKSNSLICIGTK
NT seq 1764 nt   +upstreamnt  +downstreamnt
atgaaaatgaagcggatgaagagcgatgtgatcagcgcgacaatcgagtcttacctgaaa
cggcgtcattatcagacccacgattatcgcaagggcgatcagttgttctgtcagaacagc
gatcagacgactttgaatgcgaccgcggagtgcggcacctcgcaggacaattcgatcgtt
ttcagtgccatcaccattgatatcattgcggcagatcaggcatatcagcgattgaagaaa
tggatgagcgtcgcactcaacgaaaaattacgaatagagttacaaggacttttgtatccg
attttttgccatctttatttagagatgttacacgctggtagtcgtcaagctgcaatccaa
ttcctaaagacgtatcagaacgagtttatgagtgatacggagaaagacttcttagaagaa
ttatctagcgtattttcggtgcaagatattgagttgaggcctttggtaaatgcgttcaga
actagaaagtataaagtagatctatctgaatcggcacatatttgtctgagacaatatctt
accaaatatggacacataatattattgcagattataaatacacacatcacaataattaga
aaagcagatagccctcaaatggatggagaagtattggaagaaagaagtcaaagatatgaa
gcaagtattaacggccacgtggaacaaccttctggtaccggtatagatcgtgaaatgaga
gaattgcaggaagctatacgattgatacagcataattctcatcaagcattaagattgttt
acagtgaagaatgctatagaaaatgcaagttgcggtcttattgcacctaaaatggacaag
ttggctgtaggttttagtacagctgaaatacgtttgtgggctataggagatacagttttg
gtcaagaaaaatgataaacagtgtgttccgtctacctgtgatatatcaccattttataaa
ttcaatgagcaagaaagcacaataagaagcgaagcaggggcaatagtattaagaggacat
acagatgtagtacacgatttaagatttattccagaggtagatattcttctttctgtatcg
agcgacaaagatatgagagcatggaaactcaacaattactcatgtacagcaatatatagc
ggtcatagctatcctatatggtgcatggataccagtgtgttcaatttatatatcgccaca
ggctcacacgacagaactgcaaaattatggtcattggatagaacatttcccttgagaata
tttgctggtcattttttagatgtcaattgcataaaatttcatccaaacgcaagatactta
gcaaccggttccgctgataaaactgtaagattatggtcaaaagacgatggtaatctattg
cgagtatatgttggagcgcaatcgactatttatactttagcttttagtccagatggcaaa
tatctggctgctgcaggtgatgacaagtccatatttatatgggatttagcaactaatggt
ttactgactgaactgaaaggtcataaagatacaatcatgaatgtagattggagtttagat
aatcaatatattgccagtgcaagcttagatggaatcgtacgattgtggtctactcaagat
tttatcaaaacattaaatggaggatcgtcaagtattatgttgcagtcagaagcgccacaa
atttattcaacatattgctcaagcattctctcattgaattattacaagaaaagcaattcg
ttgatttgtatcggtactaagtaa

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