Cyphomyrmex costatus: 108781082
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Entry
108781082 CDS
T11118
Name
(RefSeq) DEAD-box helicase Dbp80
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
ccoa Cyphomyrmex costatus
Pathway
ccoa03013
Nucleocytoplasmic transport
ccoa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccoa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108781082
03015 mRNA surveillance pathway
108781082
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccoa03019
]
108781082
Enzymes [BR:
ccoa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108781082
Messenger RNA biogenesis [BR:
ccoa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
108781082
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_30
Motif
Other DBs
NCBI-GeneID:
108781082
NCBI-ProteinID:
XP_018404460
UniProt:
A0A195C3I4
LinkDB
All DBs
Position
Unknown
AA seq
481 aa
AA seq
DB search
MASTKVDWGQHADEQDKLALKVTGLDLDKSNSTSIPTSSVKDGDIKSDDDTSEEQISPAE
KSLLQKIIRKGLVETTKDLEIQRKDPNSPLYSVKTFDALHLKPALLKGVYAMGFNAPSRI
QETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVNVTENYPQVLCLSPTYELAIQT
GEVAAKMSRFCPEIKIKYAVRGEEISRGSKIAEHIIIGTPGKVLDWGQKFKFFDLSQISV
FVLDEADVMIATQGHQDQCIRIHKLLPRTCQMMFFSATYEPEVMNFAEIIVSNPLIIRLL
REEESLDNIKQYYIRCKNVDEKYTAITNIYGVITIGQAIIFCHTKKTASWLAGKMTKDGH
AVAILSGDLTVEQRISVLDRFRAGLEKVLITTNVLARGIDVEQVTIVVNFDLPMDQKRQA
DCETYLHRIGRTGRFGKSGIAINLIDSDHAMQLCQNIEKHFGKKIHYLDAEDADEIEKIG
A
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgactaaggtcgactgggggcagcacgccgatgaacaggataaattggcgttg
aaggtaaccggtttggacttggataaatcgaattcgacatccattcctacttcatctgtg
aaagatggagacatcaagagtgatgacgatacgtcagaagaacagatttcaccagcagag
aagtctctcctacaaaagatcataaggaaaggattggtagaaacaacaaaggatttagag
attcaaagaaaagatccaaattctccattatacagtgtcaaaacctttgatgcacttcat
ctcaaacctgccttactaaaaggtgtttatgccatgggattcaatgcaccctctagaatt
caagaaactgctttacctactttactcgctgatccaccacaaaatatgattgcacaatct
cagtctggaacgggtaagacagcagcatttgtactcgctatgttgagtcgagtgaatgtt
acagagaattacccacaggttctttgtttgtcgccaacttatgaattagcaatccaaact
ggcgaagtagcggcaaagatgtcgcgcttctgtcctgagataaaaataaaatacgctgta
agaggagaagaaataagtcgtggttcaaagattgctgaacatattattataggaactcca
ggcaaagtactagattggggacaaaagttcaagttctttgatctaagccaaatatcggta
tttgtattagacgaagctgacgttatgatcgctacgcaaggtcatcaagatcagtgtata
cgtattcacaaattactgccacgtacgtgtcaaatgatgttcttttctgcgacatacgag
ccggaagtgatgaactttgcagagattatagtcagtaatccactaataatacggctatta
agggaagaagaaagtttagataatatcaagcagtattatattagatgcaaaaatgtggat
gagaaatacacagctatcactaatatttatggagtgattactattggacaagcgattatt
ttctgtcatacaaagaaaacagctagttggttagcaggaaaaatgacgaaagacggacat
gcggtagcaatattatctggtgacttaacagtggaacaaagaatttctgtattggataga
tttagagctggacttgaaaaagttctcatcaccacaaatgtcttagctagaggcattgat
gttgaacaagtaacgatagtagtcaattttgatttaccgatggatcaaaagcggcaagcc
gattgcgaaacatacttacacagaatcggaagaacggggcgattcggcaagtctgggatc
gccattaatttaattgattctgatcacgctatgcaattgtgccagaatatagaaaaacat
tttggcaagaaaatccattacctcgacgcagaagatgcagatgaaatcgagaaaatcgga
gcctag
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