Cyphomyrmex costatus: 108781514
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Entry
108781514 CDS
T11118
Name
(RefSeq) general transcription factor IIH subunit 4
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
ccoa Cyphomyrmex costatus
Pathway
ccoa03022
Basal transcription factors
ccoa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccoa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108781514
09124 Replication and repair
03420 Nucleotide excision repair
108781514
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccoa03021
]
108781514
03400 DNA repair and recombination proteins [BR:
ccoa03400
]
108781514
Transcription machinery [BR:
ccoa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
108781514
DNA repair and recombination proteins [BR:
ccoa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
108781514
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
108781514
NCBI-ProteinID:
XP_018404990
UniProt:
A0A151I7U4
LinkDB
All DBs
Position
Unknown
AA seq
467 aa
AA seq
DB search
MSSSVTGKNLLRPNSLQCTNLQEYLKSRSSDTLNKLYHKPPICLAVFRELPVIAKHYVMR
LVFVEQPVPQAVIASWCSKLYFEEHQKVVQILNELYVWKEASIPGGLPGWILNNTFKKNL
KIVLLGGGKPWTMSNQLEIDSKPRDVAFLDSYALERWECVLHYMVGSQQQEGISADAVRI
LLHAGLMKRDEADGSPIITQAGFQFLLLDTASQVWYFILQYLDTIEARGLDLVECLTFLF
QLNFSTLGKDYSTEGMSEGLLTFLQHLREFGLVYQRKRKAGRFYPTRLALNIATGETKPL
TRDIDKEGYIVVETNYRVYAYTNSNLQVALLGLFCEMLYRFPNLVVSILTRDSVRQALKS
GITASQIVGYLQQHAHSKMIEAGPPILPPTIVDQIKLWENERNRFVFSEGVLYSQFLSQT
DFEVLRDHAVSTGVLIWQSERKRTMVVTKAGHDDVKKFWKRYSKGSS
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgtctagttcggtaactggcaagaacctgttacggccgaacagcctacagtgtacaaat
ctacaggaatatttaaaatctcgtagctccgacactttgaataaactgtatcacaagcct
cctatatgcttagctgtattccgtgaattacctgtcattgctaagcattatgttatgaga
ctggtgtttgttgagcaaccagtaccacaggcagttatagcatcctggtgttccaagctc
tatttcgaggagcatcagaaggtggtacaaatcttgaatgagctgtatgtgtggaaggaa
gcatccatacctggtggactaccgggctggatcttgaacaataccttcaagaagaactta
aaaattgtactgctgggtggtggcaagccttggaccatgtcgaatcagctggaaatcgac
agtaagccgcgagacgtggcctttctggattcttatgcattggaaaggtgggagtgtgtc
ttacattacatggttggttctcagcagcaggagggcatatctgccgatgctgtaaggatt
cttttacatgctggtttaatgaagagagatgaagctgatggaagcccaattataacgcaa
gctggttttcagtttctgcttttagacacagcttcacaggtatggtattttattttacaa
tatcttgacacaattgaagcacgtggtcttgatttggtagagtgtcttacctttctgttt
caattaaatttttccactcttggtaaagattatagtaccgaaggcatgtccgaagggctc
ttaacatttttacaacatttaagagaattcgggcttgtatatcaacgaaaacgcaaagca
ggaagattttatccgactcgattagcattaaacatcgctactggtgaaactaaaccttta
accagagatatagacaaggaagggtatatagttgtggaaacaaattatcgagtttatgct
tatacgaattcaaacttacaagttgcattgcttggacttttctgtgaaatgttgtatagg
tttccaaatttagttgtttcaatattaacaagagattcggtaagacaagcattgaaaagt
ggaataactgcttctcaaatagtaggctatttgcagcaacatgcacatagtaaaatgata
gaggcaggaccacctatattaccgcctacaattgtagatcaaattaaactatgggagaat
gaaagaaatagatttgtgttcagtgaaggtgttctatatagtcaatttctttcacaaact
gactttgaagttcttagagatcatgcggtttcaaccggagtattaatttggcaaagtgaa
agaaaaaggaccatggtggttaccaaagctggccacgatgatgtgaaaaagttttggaaa
cgatattcaaaaggctcaagttaa
DBGET
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