KEGG   Cyphomyrmex costatus: 108781555
Entry
108781555         CDS       T11118                                 
Name
(RefSeq) 5'-3' exoribonuclease 1
  KO
K12618  5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
ccoa  Cyphomyrmex costatus
Pathway
ccoa03008  Ribosome biogenesis in eukaryotes
ccoa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ccoa00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    108781555
  09123 Folding, sorting and degradation
   03018 RNA degradation
    108781555
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccoa03019]
    108781555
   03009 Ribosome biogenesis [BR:ccoa03009]
    108781555
   03016 Transfer RNA biogenesis [BR:ccoa03016]
    108781555
   03036 Chromosome and associated proteins [BR:ccoa03036]
    108781555
Messenger RNA biogenesis [BR:ccoa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     108781555
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     108781555
Ribosome biogenesis [BR:ccoa03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    108781555
Transfer RNA biogenesis [BR:ccoa03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    108781555
Chromosome and associated proteins [BR:ccoa03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    108781555
SSDB
Motif
Pfam: XRN_N XRN_M XRN1_D2_D3 XRN1_D1 SH3_12 Dicer_dimer
Other DBs
NCBI-GeneID: 108781555
NCBI-ProteinID: XP_018405053
UniProt: A0A151I7K8
LinkDB
Position
Unknown
AA seq 1673 aa
MGVPKFFRYISERYPCLSEVVKEHQIPEFDYLYLDMNGIIHTCSHPNDDVCFRITEEMIF
KNIFHYIEVLFNMIRPQKLFFMAIDGVAPRAKINQQRGRRFRAAKDAEVQEAKAKAKGIP
IPKEKRFDSNCITPGTLFMAKLGEQLKCFVEHKVSTDDTWKKCKILFSGSEVPGEGEHKI
MDYIRYMKASKDYNSNSSHCLYGLDADLIMLGLCSHEPNFSLLREEVKFGKQQVKMTPEE
TKFCLLHLSLLREYIEHEFSPIKDKLSFSFDIEKIIDDWVLMGFLVGNDFIPHLPNLHIA
NGALPILYRAYMEVLPTLEGYINEAGTLKLDRFEKFMEKLSRLDVEQFNEQYADIKFFES
KTGRRPNESERYIYKKTEDSENASPKKTQNKDFLDALIKNTKDMSLGNFDDDNDIFLEYR
NMDLIVDDESDSEIYNMEFVQHKKDYYMNKLEYENVNEEVLRSQAEGYVRAIQWNLHYYY
HGCCSWSWYYPHHYAPYISDVKDFKDLKLEFDLGEPFLPFQQLLAVLPAFSKDLLPEAFQ
SLLTEESSPIINYYPHNFKTDLNGKRQEWEAVVLIPFIDEKLLLAAMQPHLSRLTLEEQA
RNKYGPMCLYSYTDEIQSVQKTTLYFPEFTNHAQVKLMNREDIFVPREQLIRGLSPSFDL
NIYYPGFPILRHLDHTPHLEKARVKVFQQHSVLDSMILTIISKPTPDLTTLASNVLGKSV
YVEWPHLKEVLVVGVADCNVKLSLINQLGSYSDNNLKKEDVKGALAAEWNIVCKQVKELH
MSRLGIDIGDTKVLLYARSFLGNKHVFGVYGKVTVEKQWNDYVAAHAYQTVVKDISVYSK
TLPVYETMHDIFIPGTFCFMLGHPYYGAMGEVVQNKEDCKSRRIKISIKAIKEPTFDTIR
QAYGQQKARYMLGGVAAQRLGISSHLLSRITGTIYVIESSTIDVTKHNLGLNLKFSKRNE
EVPGYTKKENNQWLYSSKAIDLIRNYMTKCPYLFERLAQNVANDIFQEEELFTKGSDELK
DTIAWLKMELNGLESRTCGMDVIEPYLIKQIEEEVEKYLETEETMAKTVFMQVKPQLLYK
PDLHLRNVSPDPNSQNRLFDRIRCVRNGFSVPLGAKGTITGVRNGSNSNDTMYDVLFDKP
FIGGFTLNGCSQFRGYRLSTMDFVNISFGERMEQGNVANELPESWRQTSSASPSKKNDQS
MLNAYPQMQLAKKGLEKLNRDICLRMAQHGIELNSKTIPCKTLPQTSQHTPPPPNRTSEF
QALWNELHKMQKPNGPPEKVAASSSTSRAKSFSNDHSVQSSQDPSAFLKAVLKIPDVNLQ
TNKQESTPQQSMVQQSIPQQSVPQSAAMLQKATVPQKDQNPPPLVQQLFDRARQTEQKKE
KANAVWYSTQLLKHFSYNGSGIPKYNYVVDEKTGLISANVMLMDNRIFQGDPCTTHEQAT
ESAAKKAYKALNLNKTSMHDTKVKPMIPHWFNTQNNWIQNIRPPIMPPMGSVKIPPLPLN
MPMQPNIFYPKWNPKLPPTPAFMQLASYSQSRQLQMKHQIPQKGPQNGSKMEIKNSTAFV
PLQAQKKSRNASVQQASKETHAKKSSPSKTQQQPQKQQKQEETLPKKQKPEVVNKAREKI
ASNEPQQQPKQQPQQQSQQQSQQNAGKSSRPRKSRVAAKFGKQPLLNGGEPPQ
NT seq 5022 nt   +upstreamnt  +downstreamnt
atgggcgtgccaaaattcttcagatacataagcgagagatatccctgtctcagcgaggtc
gtgaaggaacatcagataccagaatttgattatttatatttggatatgaacggtattata
catacatgttcccatcccaatgacgatgtttgcttccgtatcactgaggagatgattttt
aaaaatatatttcactatatagaggtgctatttaacatgatccgcccacagaaattgttt
tttatggcaatcgatggtgtcgcacctagagcaaaaatcaatcaacaaagaggccgacgt
tttagagccgctaaggatgctgaagtacaagaggctaaagccaaggccaagggtatccca
atacccaaagagaagagatttgactcaaattgcataaccccaggaacacttttcatggct
aaattaggcgagcagcttaaatgctttgttgaacacaaggtttctacagatgatacctgg
aaaaaatgtaaaatattattcagcggttctgaggtacctggagaaggagagcataagatt
atggattacataagatacatgaaggcaagcaaggattacaacagtaattctagccattgt
ttatacggtttggatgcagatttaataatgttaggtctctgttcacacgaaccaaatttc
tctcttttgagagaagaagtaaaatttggtaagcaacaagtaaaaatgacccccgaggag
acaaagttctgccttcttcatttgtcacttttacgagagtacatagaacacgagttttca
ccgatcaaggataaactgtcattttcatttgatattgagaaaataatcgatgactgggtg
ttaatgggttttctggtaggaaacgattttattcctcatctaccaaatttacatattgct
aacggtgcactgccaattctgtaccgtgcatatatggaggtattaccaacactagagggt
tatataaatgaagctggaacattaaaactcgaccgttttgaaaagtttatggagaaactt
agccgtttagatgtagagcagtttaacgagcaatatgctgatataaagtttttcgaaagt
aagacaggtagaaggcccaatgaatctgaacgatatatatataagaaaacagaagacagt
gagaatgcatctccaaagaaaacacaaaataaagattttttagatgctcttatcaaaaat
actaaggatatgtccttaggtaattttgacgacgataatgatatctttctagagtataga
aatatggatttaatagtagatgatgaatcagatagtgagatatataatatggaatttgta
caacataaaaaagattattatatgaacaaattagaatatgaaaatgtcaatgaagaagtt
ttacgttcacaggctgaaggctatgtgagagcgatacaatggaatttgcattattattat
cacggttgttgcagctggtcgtggtattatccacatcattacgccccatatatctcagat
gtaaaagactttaaggatttgaagttagaatttgacttaggagagccattcttacctttt
caacaattgctagctgtattaccagcatttagcaaagatttattgccagaggcatttcag
tcactactgacagaggaatcttctccgattattaactattatccacataattttaaaact
gatttaaatggaaaacgacaggaatgggaagcagttgtacttatcccatttattgatgaa
aaattactgttggctgctatgcagccacatttatcaagattaacacttgaagaacaagca
aggaataaatatggaccgatgtgtttgtactcgtacaccgacgagattcaaagtgttcag
aagacaacattatactttccagaatttaccaatcatgctcaagtaaaattaatgaatcgc
gaagatattttcgttccaagagaacaattaattaggggattatctcctagttttgatctc
aacatttattatccaggatttcctatactacgacatttggaccacacaccgcatttagaa
aaagcgagggtcaaggtatttcagcaacattcagtcctagacagtatgattctaactata
atatcaaaaccaacacctgatttaacaactttagcgtcaaatgtgttaggaaagagcgta
tatgtggaatggcctcatttaaaagaggtccttgtagttggtgtggctgattgtaacgtg
aaactcagtttaatcaatcaattaggcagttacagtgataataatttgaagaaagaagat
gtgaagggcgcgttagccgcagaatggaacatagtatgcaaacaagttaaagaattacat
atgtcacgtcttggaatagatattggcgatacgaaagtgttgctttacgctcgctcgttc
ctgggcaacaaacatgtttttggtgtttatggaaaagttacggtcgagaaacagtggaac
gattacgttgcagctcatgcttatcaaactgtagtcaaagatatctcagtgtatagtaaa
acattgccagtctacgaaactatgcatgatatttttataccaggaaccttttgtttcatg
ttgggacatccttattatggtgcaatgggagaggttgtacaaaacaaagaggattgcaaa
tcacgcagaatcaaaatttctataaaagccataaaggagccaacatttgataccattaga
caagcttatgggcaacagaaagcgcgatatatgcttggcggtgttgccgcgcaacgtctt
ggaataagtagtcatcttttgagtaggattactggaacaatttatgttatagaatcatcg
acgattgacgttactaaacataatcttggattgaatttaaaatttagtaaaaggaatgaa
gaggtacctggttataccaaaaaggaaaacaatcaatggttatatagctcaaaagcgatt
gatctgattcggaattacatgacaaaatgtccttatttgttcgaacgtttagcccagaat
gtagcaaacgatattttccaagaagaagagttattcacaaagggttcggacgagctgaag
gatacaattgcatggttgaaaatggaactgaatggtttagaaagtcgcacttgcgggatg
gatgtgatcgaaccgtacttgataaaacaaatcgaagaagaagttgagaaatacttggag
actgaagaaaccatggcaaaaacggtctttatgcaagtgaagccgcaattactttataaa
ccggatttacatttacgtaacgtgtcacccgatccgaactcccaaaatcgtttgttcgat
agaattcgctgcgttagaaacggctttagtgtaccgctcggtgctaagggtactatcacc
ggagtacgaaatggaagtaattcaaatgatactatgtacgacgttttgttcgataagcct
tttattggcggatttacattaaatggttgctctcaatttcgcggttatcgtttgtcgact
atggacttcgtaaatattagtttcggcgaaagaatggagcagggaaatgtagcgaatgaa
ttgccggaaagctggaggcaaacgagttctgcttctcctagcaagaagaacgatcaatca
atgttaaacgcatatccacaaatgcagctcgctaagaagggacttgaaaaattaaatcgt
gatatttgtttgcgtatggcacaacacggtatagaattgaattcgaaaacaataccgtgc
aaaacattacctcagacctcgcagcacacaccgccgccacccaatcgaacgtctgagttt
caagcgctgtggaacgaattgcacaagatgcaaaaaccgaatggaccaccggagaaagtt
gctgcatccagttcaacatcgagagccaagtcattcagcaacgatcacagtgtacaatcg
tcgcaagatcctagcgcatttttgaaagctgtgctaaagattcctgacgtaaatctgcaa
acaaacaagcaagaaagtacgcctcaacaatctatggtgcaacaatctataccacaacag
tctgtgccgcaatccgcggcgatgcttcaaaaagcaacggtcccgcagaaggatcagaat
cctccacctttagtacaacagttattcgatcgtgcccgacaaacagaacagaaaaaggag
aaagcaaatgcggtttggtatagcacgcaattattgaaacatttctcatataatggaagt
ggcataccaaaatataattatgttgttgacgaaaaaacgggtttaatcagcgctaatgtt
atgcttatggataataggatttttcagggcgatccttgtactactcatgaacaagccaca
gaaagcgctgcgaaaaaagcatacaaggcgttaaatttgaataaaacatcaatgcacgat
acgaaagtgaaaccaatgatacctcattggtttaacactcaaaacaattggatccaaaat
atccgacctcctataatgcctccaatgggctctgtgaaaataccaccactcccgctgaat
atgcctatgcagcctaacatattttatccaaagtggaacccaaaattaccaccaacccca
gcattcatgcaactcgcatcatatagccaaagcaggcaactgcaaatgaaacatcagata
ccacagaaaggtcctcagaatggatcaaagatggaaattaaaaatagcactgcatttgtt
ccgttacaggctcagaaaaagagtagaaacgccagcgtacaacaagcctcaaaggagacg
catgccaaaaagtccagtccttcaaaaacgcagcagcaaccacaaaaacagcagaaacaa
gaggaaacgttgcccaagaaacaaaagcccgaagttgtaaataaggccagggagaaaata
gcgtcaaacgagccacagcaacaaccgaaacaacagccgcagcagcaatcacagcaacag
tcacaacaaaatgcagggaaatcgtccaggcccagaaaatcacgtgtcgccgcaaaattc
ggcaaacaacccttgttaaatggtggtgaaccccctcagtga

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