Cyphomyrmex costatus: 108782106
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Entry
108782106 CDS
T11118
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
ccoa Cyphomyrmex costatus
Pathway
ccoa03030
DNA replication
ccoa03420
Nucleotide excision repair
ccoa03430
Mismatch repair
ccoa03440
Homologous recombination
ccoa03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ccoa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
108782106
03420 Nucleotide excision repair
108782106
03430 Mismatch repair
108782106
03440 Homologous recombination
108782106
03460 Fanconi anemia pathway
108782106
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccoa03000
]
108782106
03032 DNA replication proteins [BR:
ccoa03032
]
108782106
03400 DNA repair and recombination proteins [BR:
ccoa03400
]
108782106
Transcription factors [BR:
ccoa03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
108782106
DNA replication proteins [BR:
ccoa03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
108782106
DNA repair and recombination proteins [BR:
ccoa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
108782106
MMR (mismatch excision repair)
108782106
DSBR (double strand breaks repair)
HR (homologous recombination)
108782106
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
CDC24_OB3
zf-AN1
Motif
Other DBs
NCBI-GeneID:
108782106
NCBI-ProteinID:
XP_018405776
LinkDB
All DBs
Position
Unknown
AA seq
605 aa
AA seq
DB search
MYQLTEGAVEKIMRGIDVHNPVLQILGYKKLPRNVNKDGSATERFRLLISDGQKLNSFTM
LATQLNNLITENILNDYAICKITNYHMSSVNNSGKEKRVMLILGIEVLVPGNEVGNKIGD
PTNIEMKSESECTTSMSVPKATIAPFHNGSTRNVTSNHQMSSEICTTPIAALSPYQNKWV
IKVRVTNKSPIKTWSNSRGEGKLFSMDLIDESGEIRCTAFRDQCEKFYDMIETGNVYYIS
RCTLKAANKKFCTLKNDYEMTLTNETEIIPCHENSDDIPTLQFDFRSISQIENIEKDNII
DVLGVVTSFNEVQHITQRSTGRELIKRDVNIVDNSGTMVCLTLWGKQAEDFDGSNNPIVA
IKGARVGEFNGGKNLSLLHSSVLEKDPDLPEAHRLRGWYTAVGHSENAKSLSKVSGGGDF
NAPLYTFEEATEARLGEKMNLVDTFTVVATINTIRVENAVYKACPVESCKKKLIDQSTGV
FRCEKCNKDYPNFLYRLLASMNIVDATGSRWITAFSEDAEKILGMSAQELGELKENDNDA
FLQKFGEASLKRYIFTLRAKSEVFQDEMRIKHVCLSVAPINYKTYLAHLIDRVSKLVHIE
KLDTN
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgtatcagttaaccgaaggagcggtggagaaaattatgcgaggcatagatgtccataat
ccagtgctccaaatattgggttataagaaactgccaagaaatgttaataaagatggttct
gctactgaacgattcagattgttaatatcggatggacagaagttaaactcattcacgatg
ttggctactcaattgaataatctaatcacagagaatattttaaatgattatgcgatctgc
aaaataaccaattatcacatgagttcagtgaacaatagtggcaaagaaaaacgcgttatg
ctgatactgggtatcgaagtgttggttcctggcaatgaagtcggaaacaaaataggtgat
ccgactaatatagaaatgaagtcagaatctgagtgtactacatctatgtctgtgcctaaa
gctacaattgctccttttcataatggttcaaccagaaatgttacttcaaatcatcaaatg
tcttctgaaatatgtactacaccaatcgcagcattaagtccttaccaaaacaaatgggta
atcaaggttcgtgtgaccaataagtctccgatcaaaacgtggagcaactctcgtggagaa
gggaagctgttttccatggatctgattgatgaaagcggcgaaattcgatgcactgcattt
agagatcagtgtgagaagttctacgacatgatagagactggaaatgtgtactatatctca
cggtgtacactaaaggcagcaaacaaaaaattttgcacattgaaaaatgattatgagatg
actttgactaacgaaacggaaatcataccttgccacgaaaatagcgatgatattccgacg
ttacagtttgacttccgttccataagtcaaattgaaaacatagaaaaagataatataata
gatgtcttgggtgtcgttacatcctttaacgaggtacaacacattacacagcgatctact
ggtcgagaactcataaagagagatgtgaatattgtcgataacagcggtacgatggtatgc
cttacactgtggggtaagcaagctgaagattttgatggttccaataatccaatcgtagcc
attaagggagcgcgcgtgggtgaatttaatggtggaaagaacttgtcccttttacattcc
tctgtacttgaaaaggatcctgatcttcctgaagcacacagattgcgcggatggtacacc
gcagtcggccactcagaaaatgcaaaatcattgtctaaagtaagtggaggtggtgatttt
aatgcgccattgtacacttttgaagaggcgaccgaagctcgattgggggagaaaatgaat
cttgtagatacgtttacggtggtggcgactattaatacaatccgcgtggaaaatgctgtc
tacaaggcgtgtcccgtagaaagttgtaagaagaagttaatcgatcaatctactggagtc
tttagatgcgagaaatgtaacaaggactacccaaatttcctgtatcgcttactggcaagt
atgaatatagtggatgcaactggcagtcgctggataactgcctttagcgaagatgctgaa
aagatattgggaatgtcggcgcaagagttaggagaattgaaggagaacgataacgatgct
tttttgcagaaatttggcgaggcgagcttaaagagatacatatttacgttaagggcgaaa
tctgaagtttttcaggatgaaatgagaataaaacacgtatgtttgtcagtcgcacctata
aattacaagacttacctggcacatctgatagacagagtttccaagctggtgcacattgag
aaattggataccaattag
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integrated database retrieval system
