KEGG   Cyphomyrmex costatus: 108782476
Entry
108782476         CDS       T11118                                 
Name
(RefSeq) transcription initiation factor TFIID subunit 5
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
ccoa  Cyphomyrmex costatus
Pathway
ccoa03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:ccoa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    108782476
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ccoa03021]
    108782476
   03036 Chromosome and associated proteins [BR:ccoa03036]
    108782476
Transcription machinery [BR:ccoa03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     108782476
   Coactivators
    SAGA/TFTC/STAGA complex
     108782476
Chromosome and associated proteins [BR:ccoa03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     108782476
    STAGA complex
     108782476
    TFTC complex
     108782476
    SAGA complex
     108782476
    SLIK complex
     108782476
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz TFIID_NTD2 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd WDR55 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_1st Beta-prop_EML NBCH_WD40 Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_IFT122_1st ANAPC4_WD40 Beta-prop_SCAP Beta-prop_RIG_2nd Beta-prop_IFT140_1st WDR90_beta-prop_4th WD40_RFWD3 Beta-prop_EIPR1 Beta-prop_DCAF4 Beta-prop_SPT8 Beta-prop_WDR19_1st Beta-prop_HPS5 WDR54 PEP5_VPS11_N Beta-prop_RIG_1st Beta-prop_DCAF12 Cytochrom_D1 DUF5713 VPS8_N GGDEF
Other DBs
NCBI-GeneID: 108782476
NCBI-ProteinID: XP_018406258
UniProt: A0A151INR9
LinkDB
Position
Unknown
AA seq 652 aa
MDNDKNTMLAVLQLLKKYNFKGTEELFRKEANLTDISIDDSQQSDSDVTSVLSAYKSEGD
PAQYEKAYSELKKFVEGALDIYKHELGTILYPVLVHMYLELVYNNHSQEAKQLIQKFSRN
LEEYYQDDLKRLSNVTKREQMAGNELTDTFKSNQFIIRMSRDTLSILKRHLQEKKHSVLL
NIIQEHLYFDMYEGVARNKQQIEATSGAMVGEATRQDNKAKVYYGLLKEPDIQLETNKEE
EEDKEGGTDGDKPKKKKAKKDPLFSKKTKSDPNAPSVGRMPLPNLKDADKLEKVKALREA
IKRVVLGPDTLPSICFYTMLNTVYTVTAAEIAEDSSLLATGFSDSTIKVWSLIPQKLKLM
KTGEPLQDIIREADDVLVRMMDERTSETTKNLYGHSGPIYSLSFSPDRNLLLSSSEDTTI
RLWSLHTWTCVVCYKGHLFPVWCIRFSPHGYYFSSASNDKTARLWATDSHQPLRIFSGHY
SDVDVVQFHPNSNYIASGSSDMTVRLWDCVTGNQVRLMTGHKGPIFSLAFSTEGRFLASA
GADHRVLVWDLAHGHLVAALSGHTANIHCLSFSRDGNILVSGSLDCTLKLWDFTKLAEEM
SLEDVNVSHNPDVKTNSESYLLRTFPTKNTSVLTLHFSRRNLLLGIGMFESA
NT seq 1959 nt   +upstreamnt  +downstreamnt
atggataacgataagaataccatgctcgcagttttgcagcttttgaagaagtacaatttt
aagggaactgaggaattgttcagaaaagaagctaatcttactgatatttcgattgatgac
tctcaacaatctgattctgatgtaaccagtgtcctttctgcttataaaagcgagggagat
cctgcacaatatgagaaagcatacagtgaattgaaaaaatttgtagaaggagctttggat
atttataagcatgagttgggaaccatattatatccagttttggtacacatgtatttggaa
ttggtttacaataatcattcccaagaggcaaaacaactcatacaaaaattcagtagaaac
ttagaagagtattatcaggatgacttgaaaagattatccaatgtaacaaaacgggagcaa
atggcagggaatgaattaaccgatacttttaaatccaatcagtttataattagaatgtcg
agggataccctttcgatactaaaacgacatttgcaagaaaagaaacatagtgttttatta
aacatcatacaggagcatctttactttgatatgtatgaaggtgttgctcgtaataaacag
cagatagaagcaacatctggagctatggtaggagaggctactaggcaagataacaaggcc
aaagtctattatggacttttaaaagaacctgatattcaattggagacaaataaagaagag
gaagaagataaagaaggtggcacagatggtgataaaccaaagaagaaaaaggctaagaaa
gatcctttgttttcaaagaagacaaaatctgatccaaatgcaccatctgtgggcagaatg
ccattacccaatctgaaagatgcagataaactggaaaaagttaaggcattgagagaagcg
ataaagagagttgtccttggacctgacacattaccatctatatgtttctatactatgtta
aacactgtttacaccgtaacagcggcagaaatagcagaggactcaagtttattagctact
ggatttagtgattctactataaaagtatggagtttaattccacaaaaactgaaattaatg
aaaacgggtgaaccattacaagacattattagagaagcagacgacgtattggttagaatg
atggatgaacgaacatctgaaactacaaaaaacctctatggtcatagtgggccaatttat
agtctttcatttagtccagacagaaatcttttactttcgtcatcagaagataccacaata
aggctatggtcattgcacacttggacatgtgttgtctgttacaaaggccatttatttcct
gtgtggtgcatacgattctcaccgcatggttattacttttcaagtgcctcgaatgacaaa
actgccagattatgggcgactgactctcatcaaccgttacgaatattttctggccattat
tcagatgttgatgtagttcaatttcatccaaattcgaattatatcgcgagtggttcaagc
gatatgactgtaagattatgggattgtgtaactggcaatcaagtccgattgatgactggg
cataaaggaccgattttttctttagctttctcaacagaaggtcgctttttagcttcagct
ggagcagatcatcgagtacttgtatgggatttggcacatggccaccttgttgcagcttta
tctggccatacagctaatattcattgtttatcgtttagtcgagatggcaatattctagtc
tcaggttccttggactgtacattgaaattatgggattttacaaaattagcagaagagatg
agtttggaagatgttaacgtttcacacaatccagatgtaaaaacaaactcggaatcttac
ctactacgtaccttcccgacaaaaaatacgtctgtcctaacgctacatttttcacgtaga
aatttattactgggtatcggcatgtttgagtcagcatag

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