KEGG   Cyphomyrmex costatus: 108782963
Entry
108782963         CDS       T11118                                 
Name
(RefSeq) ATP-dependent RNA helicase Ddx1
  KO
K13177  ATP-dependent RNA helicase DDX1 [EC:5.6.2.7]
Organism
ccoa  Cyphomyrmex costatus
Brite
KEGG Orthology (KO) [BR:ccoa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ccoa03041]
    108782963
   03016 Transfer RNA biogenesis [BR:ccoa03016]
    108782963
Enzymes [BR:ccoa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     108782963
Spliceosome [BR:ccoa03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    108782963
Transfer RNA biogenesis [BR:ccoa03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    108782963
SSDB
Motif
Pfam: DEAD Helicase_C SPRY Cas3-like_C_2 CMS1
Other DBs
NCBI-GeneID: 108782963
NCBI-ProteinID: XP_018406866
LinkDB
Position
Unknown
AA seq 729 aa
MTAFEEMGVLPEIGKAVDEMEWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI
LQIVWETLKDLESGKGATGAVFQQPTHWGLSLFDRGRAMAVTTDGLRCQSREQKEWHGCR
ANKGVSGSNKYFFEATVTDEGLCRVGWSTSQAALDLGTDKFGYGFGGTGKKSNAKQFDNY
GEAFGMHDVIGCYLDLVKGEIKFTKNGIDLGVAFTLNTQQKSQTYYPAVVLKNSEMAFNF
GAQPFKHSPPNDCVAVSLAPKEFVKYNTVNSNQSSSNESGKPKNNAPQAIIIEPSRELAE
QTYNQIQKFKTHLKDPTIRELLVIGGVSVKEQIAVLNSGVDMVVGTPGRLEDLIQGGYLL
LTHCRFFVLDEADGLLKQGYTELIDRLHKQIPKITSDGKRLQMIVCSATLHAFEVKKMAE
RLMHFPTWVDLKGEDAVPETVHHVVVMVDPQKDKLWRNLRNCIQTDGVHAKDEMNQTNDI
ACSLSEGVKILKGEYCIRAIKEHKMDRALIFCRTKLDCDNLERYLKKSGGHQFSCVCLHG
DRKPGERKANLEKFKRKEVKFLICTDVAARGLDISGLPFMINVTLPDEKSNYVHRIGRVG
RAERMGLAISLVSSVPEKVWYHGEWCSSRGRNCSNTNLTNKGGCCTWYNEPQYLADIEDH
LNVTIQQVGPDVKVPMNEFDGKVTYGEKKMAMGSDYKDHVQQMAPVVAELAALESKAQLK
FLSTHIAER
NT seq 2190 nt   +upstreamnt  +downstreamnt
atgactgcttttgaagaaatgggtgttttgccagaaataggaaaagcagttgacgaaatg
gaatggacactaccaacagatgttcaagctgaagcgatcccattgattttgggtggtggt
gatgtactcatggctgcagaaactggtagtggaaaaactggtgctttctgtttgcctatt
ttgcaaatagtttgggagacccttaaagatttggaatctgggaaaggagctactggagct
gtatttcaacaaccgacacattggggtctgagtctatttgatagaggacgagctatggct
gtcacgacggatggtttaagatgtcagagtagagaacaaaaagaatggcatggttgccgt
gcaaataaaggagtatcaggaagtaacaagtatttttttgaagcaacagttactgatgaa
ggtttatgccgagtaggctggtctacatctcaggctgccttagatttaggaacagataaa
ttcggttatggatttggtggtacaggaaagaaatcaaatgcgaaacaatttgataactat
ggagaggcctttggaatgcacgatgtgattggatgttatcttgatttagtaaagggtgaa
ataaaatttaccaagaatggtatagatttgggtgtcgcgtttacattaaatacacagcaa
aaatcacagacttactatccagctgttgtattgaaaaactcagagatggccttcaatttt
ggagcacaaccatttaagcattcgcctccaaatgactgtgtagctgtatctttggctcca
aaagaatttgttaagtacaatactgttaatagtaatcagagttcgtctaacgaaagtggt
aaaccaaaaaataatgcacctcaagcgatcatcatagagccttctcgcgaattagctgaa
caaacttacaatcaaatccagaagtttaagacacatttaaaggatccgacgatcagagag
ttacttgtcattggtggagtaagcgtaaaagagcagatagctgttctgaattctggcgtg
gatatggtagttgggactcctggacgtttggaggatctcatacaaggcggttatttgttg
ttaacacattgcaggttctttgtgctggatgaagctgacggactcctaaaacagggttac
accgaacttatcgatcgtctgcacaaacaaatcccgaaaattacgtcagacggcaaaaga
ttgcagatgattgtgtgttcggcaacattacatgcatttgaagttaaaaagatggccgaa
cgtttgatgcatttcccaacttgggtagatttaaagggcgaagatgcggtgcctgagacc
gtacatcatgttgtagtgatggtagatcctcagaaggacaaattgtggcgtaatttgagg
aattgcatacaaactgacggagtgcatgcaaaagatgagatgaatcaaacaaatgatatt
gcatgttcgttgtcagagggtgtaaagatactgaagggagagtattgcattcgtgccatc
aaagaacataaaatggatcgggcattgatattctgcagaacaaaacttgattgcgataat
ctcgaaagatacttgaaaaaatctggtggacatcagttttcgtgcgtgtgtctccacgga
gacagaaagcccggagagcgtaaggctaatttggagaagtttaaacgcaaagaagtaaaa
tttttgatctgcaccgacgtggctgctagaggactggacatcagtggtttgcctttcatg
ataaatgtaacgctgcctgacgagaagtctaattatgtgcatcgaattggaagagttggt
agagctgagagaatgggtctggctatttctttggtcagtagcgttccagagaaggtatgg
tatcatggcgaatggtgttcttctcgtggaagaaactgtagcaatactaatctgaccaat
aaaggtggctgttgcacatggtacaatgaacctcaatacttggcagatattgaggatcac
ttgaatgtgacgattcaacaagttggtccagacgtaaaagtgccaatgaacgagtttgat
gggaaagttacgtatggcgaaaagaaaatggcgatgggttctgattataaagaccatgtc
caacaaatggctcctgtcgtggccgaattagccgctctggaatccaaagcgcagcttaag
tttttaagcacgcatatagcggagcgttaa

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