Cyphomyrmex costatus: 108783390
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Entry
108783390 CDS
T11118
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
ccoa Cyphomyrmex costatus
Pathway
ccoa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ccoa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
108783390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccoa03021
]
108783390
Enzymes [BR:
ccoa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
108783390
Transcription machinery [BR:
ccoa03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
108783390
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Complex1_LYR_2
INTS5_N
Motif
Other DBs
NCBI-GeneID:
108783390
NCBI-ProteinID:
XP_018407448
LinkDB
All DBs
Position
Unknown
AA seq
1701 aa
AA seq
DB search
MNSKYRKHRLTPKHQDSLCLIFSIFTANDIRNLSVTNIRTSLSFNILGHPLKNGLYDPSL
GAMKNSSELCSTCGQNGSKCPGHFGHIELPIPVVNPLFHKILSMLLKLACLSCFTLQVPS
YIKLLLSAKLKLLYQGQLCDLDGLDEEVTSILSNIVKEEERTEYIRNVIDTYMQNFFNRN
KYSQNKNSENQTNIKNIITQWHTYIESILKQYVRTNKAGICMNCHDSLPKISTLQNKIMI
NNKKITSSKEVLSSKVAHKLETIMVMPDQSKEYLRKIWNNERDFLKIIVPCLELVDIEYP
TDIFFFEVIPVLPPIVRPMNLLNGQMIEHPQTHIYKSIIQDCLVLRNIIQTIQDGGIDHL
PQEGRLVFEQIKGTTAVEKLHNAWQALQNNVNHLMDRDMNKTPESINGQGLKQILEKKEG
IIRMHMMGKRVNFAARTVITPDPYLNIDEIGIPEAFARKLTYPTSVTPWNVTGLRRLVLN
GPNVHPGAVLVENEDGSIQAINSNDCTQREAIAKRLLKTSNRTNESFIGVKIVHRHLQNG
DILLINRQPTLHKPSIMAHKARILKGEKTLHLHYANCKAYNADFDGDELNAHFPQNELAR
SEGYNIANVSNQYLVPKDGTPLSGLIQDYMVSGVRLTTRGRFFSKVHYMQLVSMALPIMQ
KDVVLLSPTIIKPKMLWSGKQILSTVIINIIPSHKTRINLVSRTKINAKEWQAETPRRWK
CGTKFKNSITMSEAEVIIRHGELLCGIFDKMHYGATPYGFIHCIYELYGAICASEMLNAF
GRLFQMFLQCDGFTLGVEDILIIPKIDEKRKEIISECRKTGETIQRSMVEVSEDTPMNEI
QAKMEESYWNNSKFRAQVDHKYKSTLDVYVNNINKVCLLMGLFKKFPDNNLQLMVKSGAK
GSMVNTMQISCLLGQSELEGKRPPLMISGKSLSSFPAYDSTPRAGGFIDGRFMTGIKPQE
CFFHCMAGREGLIDTAVKTSRSGYLQRCLVKHLEGLIVSYDATVRDHDGSLIQFYYGEDG
LDVPGSCFLKKNQITFLVDNKDSIMDAKLLECLKGNDKEIAKTIKKIKKWENKNGSSLQR
RRISEFSKFSMENSDQNEEKQKIDPSNGRSKATLSLIEKWVNAEKELKELYHAQCTRCPD
PIMSKYRQDIQFGVLSEQIEHLIDEYLSCSTKIKKSVLRDLLSIKVMKTICPPGEPVGLL
AAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMTASKNMKTPSMEIPFRNNLQN
LEKHIKKLRLTLTKCVLRDVLKDIVISRRMEESPHRRLVHTLKIKYLPHKYYKKEFSVHP
RDVIKCTEEQFFKNMFKEIKKSANISKVLLKLHFEGEKRRINDEDAIIDQIDPDEVVSEN
SRSKTRMDLGEMHESSDEEQVGEDADATMTKSLLRHRENQEYEDPEEGEEEEEETEDIIL
NDKEEEVNDNNNNASRTSKAEEDDDDDDDDDTRKKLNRRKDKFTNRKDRVLNMYENAMDY
DYDENKLSWCTFTFWLPLKTIRLDLPTIIKNTVNKTVLWETKYIKKAFTFQNNEGETILK
TDGLNIAEMFKYENILDLNRLYSNDIYNISQTYGIEAAYRVIVKEIKDVFKMYGITIDSR
HLSLIADYMTFDGTFKPLSRKGMENSASPLQQISFESSLGFLKTATLQGKKDDILSPSSR
LMLGQPCKSGTGAFSILPSFF
NT seq
5106 nt
NT seq
+upstream
nt +downstream
nt
atgaacagtaaataccgtaaacaccgtttaacaccgaaacatcaagattccctatgttta
atattctcaattttcactgcaaatgatataaggaacttgagtgtaacaaatattagaaca
tcattatcttttaatattcttggacatccactaaagaatggattatatgacccatcttta
ggtgcaatgaaaaacagttcagagctatgcagtacatgtggacaaaacggttccaagtgt
ccaggtcattttggtcatatagaattaccaatacctgttgtgaatccgttattccacaaa
atattgtctatgttacttaaactggcatgtttaagttgcttcacgttacaagtgccatcg
tacatcaaattattgttgtccgcaaaattaaaattactgtaccaaggacaactttgcgat
cttgatggtttggatgaagaagtaacatccatattatcgaatattgttaaagaagaagaa
cgaacagagtatattcgtaatgtaattgacacttacatgcagaacttcttcaatagaaat
aaatatagtcaaaacaagaattctgagaatcaaactaatataaagaatatcattacgcaa
tggcacacatatattgaaagtatacttaaacaatatgtgagaaccaataaagctggaata
tgcatgaattgtcacgatagtcttccaaaaatatcaacactacaaaacaagataatgata
aacaacaagaaaattacatcttctaaagaagtactctcaagcaaagtggcacataaattg
gaaactattatggttatgccagatcagtcaaaggaatacctacgaaaaatatggaataac
gaaagagattttctcaaaataattgtaccttgtttagaattggtagatattgaatatccc
actgatatattctttttcgaggtaatacctgtgctaccaccgatcgtacggccgatgaat
cttcttaatggccaaatgattgaacatcctcaaactcacatttataagagcattatacag
gattgtttagtcttgaggaatattatacaaactatccaagatggaggtattgatcactta
ccccaggaaggtcggcttgttttcgaacaaataaaaggaactacagcagttgaaaagttg
cacaatgcttggcaagcgttacaaaacaatgtgaatcacttgatggatcgcgacatgaat
aaaacgccagaatccatcaatggtcaaggcttgaaacaaattctggaaaaaaaagaaggt
attattagaatgcatatgatgggtaaaagagtgaattttgctgcacgtacagttattact
ccagatccttatttgaatatcgatgaaattggcattcctgaagcttttgcccgcaaatta
acgtatcctacatctgtaacaccgtggaatgttaccggattgagacgattagtcttaaat
ggtcccaatgttcatcccggtgcagttctagtggaaaatgaagacggatcgatacaagcc
attaatagcaacgattgtacgcagagagaagctatcgcgaaacgtctcttaaaaacgagc
aataggaccaacgagtcttttatcggtgtgaaaatagtacatcgacatcttcaaaatggc
gatatattgctaataaatagacaaccaacattacataaaccgagtataatggctcacaaa
gcacgtattctcaagggagaaaaaacattacatcttcattatgcgaattgtaaagcgtat
aatgcagactttgatggagatgaacttaacgctcattttccacaaaatgaattagctaga
agcgaaggttataacatagctaatgtatccaaccaatatctcgtgccaaaagatggaact
ccattaagtggtcttatacaggattacatggtgtcaggtgtacgactaacgactaggggt
agatttttttcaaaggtgcattacatgcaattagttagtatggcactgccaataatgcaa
aaggacgtagttctgttatcgccaactatcattaaaccgaaaatgttgtggtcgggtaaa
caaattctttcaacagtcataatcaatattattccctcgcataaaacacgaattaattta
gtctctagaacgaaaattaatgcgaaagaatggcaagcagagacaccacgacgttggaaa
tgtggtacaaaatttaaaaattcgataactatgtcggaagcagaagttataattcgacac
ggagaattattgtgtgggatatttgataaaatgcattatggtgcaactccttacggtttt
attcattgtatttacgaattatatggtgcaatatgcgcaagcgaaatgttaaatgcattt
ggtagactattccaaatgtttctacagtgcgatggttttactctcggtgtcgaggacatt
ttaataattcctaaaattgacgagaaacgtaaggagattatttccgagtgcagaaaaact
ggcgaaactattcaaagatctatggtagaagtatctgaggatacacctatgaacgaaatt
caagctaagatggaagaatcttattggaataattcaaaatttcgcgcgcaagttgatcac
aaatataagagcactttagacgtttatgtcaataatattaacaaagtttgtctgctgatg
ggactttttaagaagttcccagacaataatttacagcttatggtgaaatctggtgcaaag
ggatctatggttaatactatgcaaatatcatgtttgctcggtcaaagcgaattagaaggt
aaaaggccacctttgatgatcagtgggaaaagtttatcaagtttcccagcctatgattca
acacctagagcaggtggtttcatcgatggcagatttatgaccggcatcaaaccccaggaa
tgcttttttcattgtatggctggacgcgaaggtcttatcgatactgccgtaaaaactagt
aggtctggttacttacaaagatgtttagttaaacatctcgaaggcttgattgttagttac
gatgcgacggttagagatcacgacggtagcttaattcagttttattacggagaggacggt
ctcgacgtaccgggttcgtgttttctaaaaaagaatcaaatcacatttctagttgataat
aaagattctattatggatgcaaagttattggaatgtctaaaaggaaatgataaagagatt
gcgaagacgataaaaaagatcaaaaaatgggaaaataaaaatggttcctcgttgcaaagg
aggaggatcagtgagtttagtaaattttctatggagaattccgatcaaaacgaagagaaa
caaaaaatcgatcctagtaatggaagaagcaaagctacgttatcgcttatcgaaaagtgg
gtaaatgcagaaaaggaactgaaagagttatatcacgcacaatgtaccagatgtcccgat
ccaataatgtcaaaatataggcaagacattcaatttggagtattatctgaacagatagaa
cacttgattgatgaatatctctcttgttcgacaaaaattaaaaaatctgttttgagagat
ttattatccattaaagttatgaaaacgatttgtccgcctggcgaaccagttggtttatta
gcggcacaatctataggtgaaccatctactcaaatgactttgaacacttttcattttgca
ggacgtggagaaatgaatgtgactttaggtattccaagattacgtgaaatcttgatgacg
gcgtcgaaaaacatgaaaactccgagtatggaaataccattccgaaataacttgcaaaat
cttgaaaaacatataaagaagctgagattgacactaacaaaatgtgttctacgcgatgta
ttaaaagacattgtaataagcagacgaatggaggaaagcccacacagaagattggtgcac
actttaaaaatcaaatatcttcctcataaatactacaagaaagagttttctgttcatccg
cgggatgtgattaaatgtactgaagaacaattttttaaaaatatgttcaaagaaattaaa
aaatctgccaatatttctaaagttttattaaagttacattttgaaggagaaaaaagacga
ataaacgatgaggacgcaataatagatcaaattgatcctgacgaagttgtatcggaaaat
tctagaagcaaaacacggatggatttaggagagatgcacgagtcatccgacgaggaacaa
gtcggggaagacgccgatgctacaatgactaaatcattattgcgtcatcgagagaatcaa
gaatatgaagatcctgaagaaggggaagaagaagaagaagaaactgaagatattatatta
aatgataaagaggaagaagtaaacgataataataataatgcaagtagaacttccaaggct
gaggaagatgatgatgatgatgatgatgatgatactcgtaagaaattaaatcgtagaaaa
gataaatttactaataggaaggatcgtgtcttgaatatgtatgaaaatgctatggattat
gattatgatgagaataaactatcatggtgcacattcactttttggttaccacttaaaacg
atcagattggatttgccgacaataatcaagaatactgtgaataaaactgtcttatgggaa
acaaagtatattaagaaagcttttacatttcaaaacaatgaaggcgaaacaattcttaaa
acagatggtttaaatatagcggaaatgttcaaatacgaaaacatacttgatttaaacaga
ttatattccaacgacatttataatatctctcaaacatatggaattgaagctgcatatcga
gttattgtaaaagaaattaaagatgtcttcaagatgtatggcatcaccattgactctaga
catctgtccttaatcgcagattatatgaccttcgacggtacgttcaaaccacttagtcga
aaaggaatggagaattccgcttcaccattacagcaaataagtttcgaaagttcgctgggc
tttttgaaaacggcgacattgcaaggaaaaaaggatgatatattatcaccttcgagtaga
ttgatgttaggacaaccgtgcaaatctggaactggggcattttctattttaccatcattt
ttttaa
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integrated database retrieval system
