Cyphomyrmex costatus: 108783506
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Entry
108783506 CDS
T11118
Name
(RefSeq) probable ATP-dependent RNA helicase DHX35 isoform X1
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
ccoa Cyphomyrmex costatus
Brite
KEGG Orthology (KO) [BR:
ccoa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccoa03041
]
108783506
Enzymes [BR:
ccoa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108783506
Spliceosome [BR:
ccoa03041
]
Complex C
Other components
Complex C specific factors
108783506
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
ABC_tran
Cas3-like_C_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
108783506
NCBI-ProteinID:
XP_018407579
LinkDB
All DBs
Position
Unknown
AA seq
683 aa
AA seq
DB search
MFRLVFSKPGDSIWQEDRPDIDAHSSTQFVYNAHHSLALDMQRQRLPIFKNKDHIIYLLE
KYQTLVLVGETGCGKSTQVPQYLLEAGWCTDGKKIGITEPRRVAATSLANRVADERNCIL
GTTVGYCIRFDDYTDETTRIKYMTEGILLRELMSDPLLTSYSVIILDEVHERTLLTDIIM
GLLKKIIRKRKSLRIIVSSATVDAEELRDFFNVNATKDSSKDSAVIMSVEGRLYPVDVFF
LKEPVANYVNGVVDTVLKIHDTEDSGDILAFLTGLDEVDQAVSLLSEHAKLIKDDKQKLL
PLPMYGSLPNTEQLKVFWRAAKDTRKVIVATNIAETSITIPNIVYVIDCGFVKIPWFEAE
TQTNSLVIVPISKASANQRAGRAGRVRTGKAFRLYTEEAYAELFEATPPEMQRSDLAPAV
LQLKALGIDNVLRFNFPSAPPSKNLVTGLELLYALGAIDSNGDLTMPLGLMMAEMPLEPV
LAKSLITSGEMGCSEEITTIIAMLQVQNVFIQPGGGQAILKARIAHRKFEVEEGDLLTLL
NVYTAFEQNKTPAWCQKYFLNHKALRRATEIRVQMHKMLKRLDIPLVSCNGNVQQILKCL
TAGLFPKAAYLHYTGTYRTVRGNKDLYIHPNSCLYTLQQPQWLLFCEILQTNKTYMKDLT
VIQPEMLLDAAPHFYERTSLESV
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgtttcggctggttttttccaagccgggagatagcatttggcaagaggataggcctgac
attgatgctcattcgtcgacacaatttgtttacaatgcacatcattcgcttgcactggac
atgcaacgtcaacgattgcctatattcaaaaacaaagatcacattatctatttgttggag
aaataccagaccttggttttagtcggcgaaacaggctgtggtaaaagtacacaggtccct
cagtatcttctcgaagcaggatggtgtacagatggaaaaaagattggcattacagagccg
agaagagtcgcggccacttctctggcgaatcgtgtggccgacgaacgtaattgtattcta
ggcactaccgtcggttattgtatacgcttcgatgattacactgatgaaacaactaggatt
aagtacatgacagagggtattctcctaagggaattaatgagtgatccgttattaacaagt
tactcggtcattatcctggacgaagtgcacgagagaacgctcttgactgatatcataatg
ggactgctgaaaaaaataatcaggaaacgaaagagtttgagaattatcgtatcgtcagcg
acggttgacgcagaggaacttcgagatttctttaacgtaaatgcgacgaaggactcgagt
aaagatagcgcggttatcatgagtgtcgaggggcgattgtatccggtggatgtatttttt
ctgaaagaaccggtggcgaattatgttaatggtgtagtagatacagttctaaaaatacat
gatacggaggattcaggtgatattctagcgtttctcacaggacttgatgaagtcgatcaa
gctgtatcccttttatcggaacacgcaaagcttataaaagatgacaaacagaaactgctt
cctttgccgatgtatggatcgcttccgaatacggaacagcttaaggtattttggagggcc
gctaaagacactcgcaaagttatcgtagcgacaaatatcgcggaaacgtctattactatt
ccaaatatcgtttatgtaatcgattgcggttttgtcaagataccctggtttgaagcggaa
acgcagacgaacagcctcgttatcgtgcccatatcgaaagcttccgccaatcaacgagct
ggccgcgcaggccgcgtacgtactggaaaagcatttagattgtacacagaagaggcttac
gcagaattgttcgaagctactcctccggaaatgcaacggtcagatttggcgccagcggta
ctgcaactgaaagccttgggcatcgataatgtattgcgtttcaattttccatctgcgccg
cccagcaaaaatctagtcacgggattggaattgctttacgcgttaggtgcgatcgacagt
aacggagatttgacgatgccattaggtcttatgatggcggagatgccattggaaccagtg
ctggcgaaatccttaatcacatctggtgaaatgggatgttccgaggagatcacgacaata
atcgccatgctacaagttcagaatgttttcatacaacccggcggagggcaagcgattcta
aaagcaagaatagctcatcgcaaattcgaagtggaagaaggagatcttcttaccttgttg
aatgtctacacagcttttgaacagaataaaacgcccgcctggtgtcagaaatatttcctt
aatcataaagctttgcggagagctacggaaattcgcgtgcagatgcataaaatgctgaaa
cgtttagacattccattggtatcctgcaatgggaatgttcaacaaattcttaaatgtttg
accgctggtctttttcccaaagcggcatatttacattatacaggtacatatagaacggtt
cggggcaacaaggatttgtacattcatccaaatagttgcttatatactctacaacagccg
caatggttactattttgcgaaattttgcaaacaaacaaaacttacatgaaggacttgact
gtcattcagccagaaatgttgttggatgcggcaccacacttttatgagagaacatcactt
gaatctgtttaa
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