Campylobacter concisus ATCC 33237: CCON33237_1408
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Entry
CCON33237_1408 CDS
T04635
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ccoc
Campylobacter concisus ATCC 33237
Pathway
ccoc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccoc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CCON33237_1408 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccoc03019
]
CCON33237_1408 (pnp)
03016 Transfer RNA biogenesis [BR:
ccoc03016
]
CCON33237_1408 (pnp)
Enzymes [BR:
ccoc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CCON33237_1408 (pnp)
Messenger RNA biogenesis [BR:
ccoc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CCON33237_1408 (pnp)
Transfer RNA biogenesis [BR:
ccoc03016
]
Prokaryotic type
tRNA degradation factors
CCON33237_1408 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
KH_1
S1
S1_2
HI0933_like_1st
KH_N4BP1_1st
Motif
Other DBs
NCBI-ProteinID:
ALF48060
UniProt:
A0A0M4SCD0
LinkDB
All DBs
Position
complement(1402385..1404583)
Genome browser
AA seq
732 aa
AA seq
DB search
MQYSIEVNNQVEIFDLNKVAKQASGAVLLRVKNTVVLATVAREDTQVEEDFLPLTVQYIE
KAYAAGKIPGGYVKRETKPGDFETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPEVD
LQVVGLNAASVALYLSDIPVNRPVCGVRVGYIDEKFVINPSNSELKQSAIDLYVAGTKDE
LLMIEMRSLPQQTTQLIPMVAIEPMIDPSLSDSMAQKQLMNEFSEDMMVEAIDFAGKAIL
RASSAYEEAFKEHKKEDAALELKPEIENENIAIYIDKFYKAEVKNAINQMAKSERASELS
KIAKQISSDEVAQKEGWDEAVITNVLGKYKKKIVREQIINEGVRADGRGLEEVRPISIET
NVLPNAHGSCLFTRGQTQALVVTTLGTDSDAQMYDILTEKVPFVEKFMFNYNFPGFSVGE
ASPLKAPGRRELGHGNLAKRALAPSIDLASPYTIRVVSEILESNGSSSMASVCGGSLALR
AAGVNTLKLVAGVAMGLIFEGDKHAVLTDIMGLEDHDGDMDFKVAGTSDGITALQMDIKL
GGISLEVLKEALYQAKRGREHILSLMAEADKNIKINEDVLPKLELFSVDPSKIVDIIGQA
GKTIKEIIEKFEVSIDLDREKGEVKIAGGAKKNVDAAKDYIISITSRDSGRSFGKKPFKH
DKERAKPNFNIGDEFVGTVKSVVDFGVFIELKDGIDGLLHISKIKSPLNVGDQVKVCVSE
QKGNKISLSLVE
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgcaatatagtatagaagtcaataatcaggttgaaatttttgaccttaataaagtagca
aaacaagctagcggagcggtacttttaagggtgaaaaataccgtagttttagcaactgtt
gcaagagaggatacgcaagttgaggaggattttttacctctaacggtgcagtacatcgaa
aaagcttacgccgctggtaaaattcctggcggttacgttaagcgcgagacaaagccaggc
gactttgaaacgctaacagctcgcatcatcgatagatctcttagaccgctctttccaaaa
ggttacgcatatcctactcaaatagtggtaatggtgctttcagctgatcctgaggttgat
ttgcaagttgttggactaaatgcggcgtcagttgcactctatcttagtgatatcccagta
aatcgcccagtttgtggcgttagggttggctacatagatgaaaaatttgtgatcaaccca
agcaactctgaactaaaacaaagtgcgatagatctatacgtggctggcacaaaagatgag
cttttgatgatcgagatgagaagcttacctcagcaaactacgcagcttatcccaatggtc
gcgatcgagccgatgatagatccgagcttaagtgatagcatggctcaaaaacagctgatg
aatgaatttagcgaagatatgatggttgaggcgattgattttgctggtaaggcgatacta
agagctagcagtgcttacgaagaagctttcaaagagcataaaaaagaggatgctgcgctt
gagttaaaacctgaaatagaaaatgaaaatatcgctatttatatcgataaattttataaa
gctgaagtcaaaaatgcgatcaaccaaatggcaaaaagcgagcgtgcgagcgaacttagc
aagattgcaaaacaaatttcaagcgatgaggtagctcaaaaagagggctgggatgaggct
gtcatcacaaatgtccttggtaaatataaaaagaaaatcgttagagagcagatcataaac
gagggcgtaagagctgatggacgtggtcttgaagaggttaggcctattagtatcgaaaca
aatgtgcttccaaatgcacatggctcatgcctctttacaagaggacagacacaagcccta
gttgtcactactcttggcactgacagtgacgctcaaatgtatgacatcctcactgaaaaa
gtaccttttgtagaaaaatttatgtttaactacaatttcccaggctttagcgtaggtgag
gcaagcccactaaaagctcctggtagacgtgagcttggacatggaaatttggccaaacgt
gcccttgcaccaagtatcgatctagcttcgccatacacaataagagtcgtttcagaaatt
ttagagagtaacggctcaagctcgatggctagcgtttgcggtggctcgctcgcacttaga
gcagctggcgtaaatactttaaaacttgtcgcaggtgtcgctatgggtcttatatttgaa
ggcgataagcatgcagtgctaacagatatcatgggacttgaagatcatgacggcgacatg
gactttaaagtagcaggtacaagtgatggtatcacagcacttcagatggatataaaactt
ggtggcattagtcttgaggtgctaaaagaggcactttatcaagcaaaacgtggtagagag
catatcttatctttgatggcagaagcggataaaaatataaaaataaatgaagatgtgctt
ccaaagcttgaactatttagtgttgatccaagcaagatcgtagacatcatcggacaagct
ggaaaaaccataaaagagatcattgagaaatttgaagtttcaatcgatcttgatagagaa
aaaggtgaagttaaaatcgcaggtggtgcaaagaaaaatgttgatgccgcaaaagattac
atcatctctataacctcaagagatagtggacgttcatttggtaaaaagccatttaaacat
gataaggagcgagcaaagccaaattttaatatcggagatgagtttgtaggaactgtaaaa
agtgttgttgattttggcgtgtttattgagctaaaagatggcattgatggcttgcttcat
atctcaaagataaaaagcccattaaacgtaggtgatcaggtcaaagtatgtgtgagcgag
caaaaaggaaataaaatttcgctctctttggttgaataa
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