Campylobacter concisus ATCC 33237: CCON33237_1823
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Entry
CCON33237_1823 CDS
T04635
Name
(GenBank) mRNA degradation ribonuclease J1/J2 (metallo-beta-lactamase superfamily)
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ccoc
Campylobacter concisus ATCC 33237
Pathway
ccoc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccoc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CCON33237_1823
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccoc03019
]
CCON33237_1823
Messenger RNA biogenesis [BR:
ccoc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CCON33237_1823
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
MupG_C
Motif
Other DBs
NCBI-ProteinID:
ALF48456
UniProt:
A0A0M4TNL4
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All DBs
Position
1811254..1813407
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AA seq
717 aa
AA seq
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MNDKNEEKVVTNQSKNNKRRRFRPKNKPKQEGETTEQTSLASKSVIDNFFAAEQAENEAH
GEPKSQNPRPKKPRNNKNQNKNGENNKPKEQKQQKEKPKQEPKAEVKNETKEQKEKPKKA
KKPKKNLPAKLNGNEQWQQDIASAMEANKATHELRLEPLKYLNSSEHKIRITPLGGLGEI
GGNMTIFETETSAIIVDIGMSFPSESMHGVDILIPDFDYVRKIKDKIKGVIITHAHEDHI
GAVPYFYKEFKFPIYATPLPLGMINNKFEEHGLKQERSLFRSVEKRKPYLIGDFEVEWIH
ITHSIIDASALAITTKAGTIIHTGDFKIDHTPIDGYPTDLGRLAYYGERGVLCLLSDSTN
SYKEGFTKSESSVGKTFDAIFSKAKGRVIMSTFSSNIHRVYQAIEWGLKYNRKVCVIGRS
MERNLYTAMELGYIKLDKKIFIDANEVGKFKDDEVLIVTTGSQGETMSALYRMATDEHKY
IKIKPSDQIIISSKAIPGNENSVSTVLNFLLKSGASVAYQDFSEIHVSGHAAQEEQKLML
RLIKPKFFLPVHGEYNHIAKHKETAISCGVDERNIYLMSDGDQMEVCQKYLKRVKTVKTG
KVFIDNQINKQIADDVVIDRQNLAEAGVVMIIAQISRHGAKLINKPRVISYGLVGDKQDA
EFRKEMEGVLEQYLSNVKEELLKDGRLLESQVRQVIRKHIFRKVKKSPTIVPIIYLM
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacaaaaacgaagagaaagttgtaactaaccaaagtaaaaacaacaaaagacga
agatttagaccaaaaaataagccaaaacaagagggtgaaactaccgagcaaacctcacta
gcaagcaaaagcgtgatagataacttctttgcagcagagcaagctgaaaatgaagcgcat
ggcgagccaaaaagtcaaaatcctcgcccaaaaaagccaagaaacaataaaaatcaaaac
aaaaatggcgaaaacaataagccaaaagagcaaaaacagcaaaaagaaaagccaaagcaa
gagccaaaagctgaagttaaaaacgagacaaaagagcaaaaagaaaaacctaaaaaggct
aaaaaaccaaagaaaaatttacctgcaaagctaaatggcaacgagcagtggcaacaagac
atcgcaagcgcgatggaggcaaacaaagccactcacgagctaagacttgagccactaaaa
tatctaaattcaagcgagcataaaattcgcataacaccacttggcggtcttggcgagatc
ggcggcaatatgacgatatttgagactgaaacaagtgcgatcatcgtcgatatcggcatg
agctttccaagcgagagcatgcacggcgtggatatcctcatcccagactttgactacgtt
cgcaagataaaagataagataaaaggcgtcatcatcactcacgcacacgaggatcacatc
ggcgcggtgccttatttttacaaagagtttaaatttcctatctacgccacaccgcttcca
cttggcatgataaataataaatttgaagagcacggattaaaacaagagcgctcgctcttt
cgatcagttgaaaagagaaaaccatatcttataggcgactttgaagtcgaatggatacat
ataacgcactctatcatcgatgcttctgcacttgctatcacgacaaaggcaggcactatc
atccacacaggcgactttaaaatcgaccacacgccgatagacggctacccaacagacctt
ggcagactagcgtattatggcgagcgtggcgtgctctgtctattaagcgatagcacaaac
agctataaagagggctttacaaagagtgaaagcagcgttggcaagacctttgacgcgata
ttttcaaaagcaaaagggcgcgtcataatgagcacatttagctcaaatatccaccgcgtc
tatcaagcgatcgagtggggcttaaaatacaaccgcaaagtctgtgtcatcggcagatca
atggagcgaaatttatacactgcgatggagcttggctacatcaagcttgataagaaaatt
tttatcgacgcaaacgaggttggtaaatttaaagatgatgaggtacttatcgtcactact
ggcagccagggcgagaccatgagcgcgctttaccgcatggctacagatgagcacaaatat
ataaagataaagccaagcgatcagataatcatcagctcaaaagctatcccaggcaacgaa
aacagcgtctcaacggtgctaaatttcttactaaaatcaggtgcgagcgtcgcttaccaa
gactttagcgagatccacgtcagcggccacgcagcacaagaagagcaaaagctgatgctt
cgcctcataaagccaaaatttttcttgccggtgcatggcgagtacaaccacatcgcaaag
cacaaagagacagctataagctgcggcgtagacgagagaaatatctatctaatgagtgac
ggcgatcagatggaggtttgtcaaaagtacctaaaacgtgtaaaaacggtaaaaactggc
aaagtcttcatagataatcaaataaataaacaaatcgcagacgacgtcgtgatcgacaga
caaaacctcgctgaagcaggtgtcgtcatgataatcgctcaaatttcacgtcacggcgca
aaactcatcaacaagcctcgtgtcatcagctacggccttgtgggcgacaagcaagacgct
gagtttagaaaagagatggagggcgtgctagaacaatacctaagcaacgtcaaagaagag
cttttaaaagatggcagactgctcgagtcacaggtgcgccaagtgatcagaaagcacata
tttagaaaggtcaaaaagtccccaactatcgtgccgatcatctatctaatgtag
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