Corynebacterium comes: CETAM_07770
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Entry
CETAM_07770 CDS
T07879
Symbol
hrpB2
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ccoe
Corynebacterium comes
Brite
KEGG Orthology (KO) [BR:
ccoe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccoe03019
]
CETAM_07770 (hrpB2)
Enzymes [BR:
ccoe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CETAM_07770 (hrpB2)
Messenger RNA biogenesis [BR:
ccoe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CETAM_07770 (hrpB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
nSTAND3
NACHT
HA2_N
ResIII
PhoH
TsaE
ABC_tran
AAA_23
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QGU04808
UniProt:
A0A6B8WDI3
LinkDB
All DBs
Position
1606027..1609935
Genome browser
AA seq
1302 aa
AA seq
DB search
MSNTSDAPVNRDALLERLADVSLSDERSIRRRLHKARTPQALAAIAADMERAAEKVASIE
AGIPPIEYPESLPVSARREDIAEAIRDNQVVIIAGETGSGKTTQIPKICLDLGRGRRGLI
GHTQPRRLAARTVAERIAEEIGQEIGGTVGYAIRFDDRVSPTSAVKLMTDGILLAEMQRD
RFLNKYDTLIIDEAHERSLNIDFLLGYLRQLLPRRPDLKVIITSATIDPERFAEHFADAD
GKPAPIIEVSGRTFPVEIRYRPMEFELDGKVIDQDPLDALCEACEELMLEGPGDILCFFP
GERDIRDAMEAIEGRKWKGVEATPLFGRLSNQEQHRVFQPHSGRRIVLSTNIAETSLTVP
GIRYVVDTGTARISRYSTRNKVQRLPIEPVSQASANQRSGRCGRVADGIAIRLYSEDDFN
SRPEFTDPEILRTNLASVILQMTMMRLGDIAEFPFLQMPENRAIHDGLLLLHELGALTDE
EREGQPVLTQTGRDIARIPVDPRMARMLVEANRLGELDAAIVIVAAMTIQDVRERPMEQQ
SQADQKHARFKDATSDFLSFLKLWDYINQSRDDLTGNAFRRRMKDEYLHYMRIREWYDLV
RQLREVTRQLGWSSRDDVAGDRSPDAIHQALLSGLLSHIGARDGNTREFKGARGTRFMIF
PGSSLAKKPPEFLMAGELVETSRLWARDVAKIEPAWVEKLAGPLLKHQHSEPSWSRKRAS
GIAHQKSTLYGLTIIADRVVAYHHVDPEAARDMFIRHALIEGDWTTHHTFFHSNVEKLEA
AAEIEEKARRRGLIVDEDTLFDFYDSRLPQTITTGRHFDAWWKKERQTNPHLLDFDPDTL
LGVDAEEITEAAFPDKWRKGSIDYDLEYRFEPGHPQDGVTILVPIPLLAGMDREGFDWLV
PGLREELLTELIRTLPKELRKTVVPAPDYAARALPRLRPYAGPLVEQFAEILRSLGGRQI
TAEDFRPSAVPAHLKMTFGAVDKRGKVIDADKDLGALIERNAGSIRASVSRVSRTSESKA
VSEWTSDTLGTVAEEVQTVVDGHEITAYPALVATPGGVEIRVHPTRAAAEASMMTATLTL
LLREISVNANQMTKGLPLQQRVAVDNYPHGGAAGLIEDARVAAIRDLMIAHGGPVRSPEE
FEELRKKVSPEVSGTVRRTVVALAPALIEYQSVAEELARWSGEAIDDMKAQLEFLVPRNA
VTLHGSAQLRHLPRYLQAMRVRLEEMAQDPDKDVDRQDEVEEAQSYLNLRLARLPKGREK
TREVKDIRWMIEELRVSLFAQRLGTARPISLRRIQKAVDKLR
NT seq
3909 nt
NT seq
+upstream
nt +downstream
nt
atgagtaatacttctgacgccccggtcaaccgcgacgccctcctcgagcgcctcgcggac
gtctccctgtccgacgaacgctccatccgtcgccgcctgcacaaggcccgcaccccacag
gccttggcggcgatcgccgcggacatggaacgggccgccgaaaaagtcgcgtcgatcgag
gccggcatccccccgatcgagtacccggagtcgctgccggtttccgccagacgcgaggac
atcgcggaggcgatccgggacaaccaggtcgtcatcatcgccggtgagacgggttcgggt
aagacgacgcagatcccgaagatctgcctggacctcggccgcggtcgtcgcggtctgatc
ggtcacacgcagccgcgccgtctggccgcgcgtacggtcgccgagcggatcgccgaggag
atcggccaggagatcggcgggaccgtcggctacgcgatccgtttcgacgaccgtgtctcc
cccacctccgccgtcaaactcatgaccgacggcatcctgctcgcggagatgcagcgcgac
cgcttcctcaacaagtacgacaccctcatcatcgacgaggcccacgaacgctccctcaac
atcgacttcctcctgggttacctgcgccaactgctgcccagacgccccgatctcaaggtg
atcatcacctccgcgacgattgacccggagcgtttcgccgagcacttcgccgacgccgac
ggcaagcccgcgcccatcatcgaggtctccggccgcaccttcccggtggagatccgctac
cggccgatggagttcgaactcgacggcaaggtcatcgaccaggaccccctcgacgcgctc
tgcgaggcctgcgaggagctcatgctcgaaggccccggcgacatcctctgcttcttcccc
ggcgaacgggacatccgcgacgcgatggaggccatcgagggccgcaaatggaagggcgtg
gaggccactccgttgttcggtcgcctgtcaaaccaggaacagcaccgggtgttccagccg
cactccggccgacgcatcgtgctctcgaccaacatcgccgagacctccctgacggtcccg
ggcatccgctacgtcgtggatacgggtaccgcgcgaatctcgcgctactccacacgcaac
aaggtccagcggctgcccatcgagccggtctcgcaggccagcgccaaccagcgctcaggc
cgctgcggccgtgtggccgacggcatagccatccgtctctactccgaggacgacttcaac
tcccggcccgagttcaccgacccggagatcctgcgcaccaacctcgccagcgtcatcctg
cagatgacgatgatgcgcctcggcgacatcgccgagttccccttcctccagatgcccgag
aaccgcgccatccacgacggactgctgctcctgcacgaactcggcgcgctcaccgacgag
gagcgcgagggccagcccgtgctcacacagaccggtcgcgacatcgcccgcatccccgtc
gatccccgcatggcccgcatgctcgtggaggccaaccgcctcggcgaactcgacgccgcg
atcgtcatcgtcgccgccatgaccatccaggacgtgcgcgaacgtcccatggaacagcag
tcccaggcggaccagaagcacgcccgtttcaaggacgccaccagcgacttcctgagtttt
ctcaagctgtgggactacatcaaccagtcccgcgacgatctgaccggcaacgcgttcaga
cgccgcatgaaggacgagtacctccactacatgcgcatccgcgagtggtacgacctggtc
cgtcagctgcgcgaggtcacccgtcagctcggctggtcctcgcgtgacgacgtcgccggc
gaccgcagccccgacgccatccaccaggccctgctctcgggactcctctcccacatcggc
gcccgcgacggcaacacccgcgaattcaagggcgcccgcggcacccgtttcatgatcttt
cccggctcctccctggccaagaagccaccggagttcctcatggccggcgaactcgtggag
acctcccggctgtgggcacgcgacgtggcgaagatcgaacccgcctgggtggagaagcta
gcgggccccctgctcaagcaccagcattccgaacccagctggtcccgcaagcgtgcctcc
ggcatcgcccaccagaagtccaccctgtacggcctgaccatcatcgccgaccgggtggtc
gcctaccaccatgtcgatcccgaggccgcgcgggacatgttcatccggcatgccctcatc
gagggcgactggaccacccaccacaccttcttccactccaacgtggagaaacttgaggcc
gccgccgaaatcgaggagaaggcccgtcgtcgcggtctcatagtcgacgaggacaccctc
ttcgatttctacgactcccgcctgccccagaccatcaccacgggccggcacttcgacgcc
tggtggaagaaggaacgccagaccaacccgcacctgctcgacttcgaccctgacacgctg
ctgggtgtcgacgccgaggagatcaccgaggccgccttccccgacaagtggcgcaagggc
agcatcgactacgacctggagtaccgtttcgaacccggtcacccgcaggacggcgtgacc
atcctggtccccattcctctgctggccggcatggaccgggaaggcttcgactggctcgta
ccggggcttcgcgaggaactgctcaccgagctcatccgaaccctgccgaaggagctgcgc
aagacggtcgtgcccgcaccggactacgccgcccgggcgctgccccgactgcgcccctac
gcggggccgctggtcgagcagttcgccgagatcctgcgttcgctcggcgggcgacagatc
acggccgaggatttccgcccctccgccgtccccgcccacctgaagatgaccttcggagcc
gtggacaaacggggcaaggtcatcgacgccgacaaggatctcggtgcactcatcgagcgc
aacgccggctccatcagagcatcggtgagcagggtgtcgcgcaccagtgagtccaaggcg
gtgtcggagtggacgtccgacaccctgggtaccgtcgccgaagaggtgcagacggtcgtc
gacggccacgagatcaccgcctaccccgcgctcgtggccaccccgggcggcgtggagatc
cgcgtgcacccgaccagggccgcagccgaggcctccatgatgaccgcgacgctgacgctc
ctgctccgcgagatctccgtcaacgccaaccagatgaccaagggacttcccctgcagcag
cgggtggcggtggacaactacccgcacggcggcgccgcaggactgatcgaggatgcgcgg
gtggccgccatccgggacctcatgattgcgcacggcggtccggtacgttccccggaggag
ttcgaggaactgaggaagaaggtttcccccgaggtctcaggcactgtccgacgcaccgtg
gtggcgcttgctcccgcgctcatcgaataccagtccgtcgccgaagaactcgcgcgctgg
agcggcgaggccatcgacgacatgaaggcacagctggagttcctggtgcccaggaatgcc
gtcaccctgcacggatccgcccagcttcgtcacctcccccgctacctgcaggcgatgcga
gtccgtctcgaggagatggcacaggacccggacaaagacgtagaccgtcaggatgaggtc
gaggaggcccagtcctacctcaacctccggctcgccaggctgccgaaaggtcgggagaag
acccgcgaggtcaaggacatccgctggatgatcgaggaacttcgggtgagcctgttcgcc
cagcgcctgggcaccgcgcggccgatctccctgcgccgtatccagaaggccgtggacaag
ctccgctag
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