Campylobacter coli FB1: VC76_04840
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Entry
VC76_04840 CDS
T03870
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ccof
Campylobacter coli FB1
Pathway
ccof02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ccof00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
VC76_04840 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccof03021
]
VC76_04840 (rpoD)
Transcription machinery [BR:
ccof03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
VC76_04840 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_ner
Sigma70_r4_2
MCR_beta_N
Motif
Other DBs
NCBI-ProteinID:
AJW58375
UniProt:
A0A0Q2MQH9
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All DBs
Position
941576..943441
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AA seq
621 aa
AA seq
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MNAKTQDMELEELFKENEKDYITYEKLVKYFSKQPNSATAKKVQTLMKKYKVQLFSAAEI
AQMKNIEDAKRLQEEKQKLQDTSLENEFDLANENDLLEWSRSDSPVRMYLREMGQIALLN
KDEEIEISKKIELGEDIIIDAFCSVPYLIDFILDYREPLINRERRVKELFKSFDDEEKND
DKLDELEDEDEENDEELENEEETPKKTSKKEDERTLKVIEKFKALEKAKKDWLKVSKDKE
SGDEILDKLGIAFKKNILKEKLMDLGPTSKLISEIVKSMETALKSDEEFDKELKRLEYRL
PMFSEELKNRHANILKDITKLSKEEITERALETTMVSTYMEIKKLFQTKEASEKSFDLEK
ERLKEILEQIKRGKKISDEAKTRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKA
VDKFEYKRGYKFSTYATWWIRQAISRAIADQARTIRIPIHMIETINQINKIIREHLQKDG
KEPDVSVIAKEVGLSVDKVKQVIKITKEPISLEAPIGSEDDGKFGDFVEDRNSLSPMDHI
LKDDLKEQIDEVLDQLNDREKAVIRMRFGLMDDESDRTLEEIGKELNVTRERVRQIESSA
IKKLKHPKVGRKLKNYIEGWK
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgaatgccaaaacccaagatatggaacttgaagagctctttaaagaaaacgaaaaagat
tatatcacttacgaaaaattagtaaaatacttcagcaagcaacctaattcagccactgcc
aaaaaagtccaaactttaatgaaaaagtataaagtacagttattttcggctgctgaaatt
gcacaaatgaaaaatatagaagatgcaaaaagattgcaagaagaaaaacaaaaattgcaa
gatactagtcttgagaatgaatttgatttagccaatgaaaatgatttgctagaatggagc
agatcggattctcctgtgcgtatgtatctaagagaaatggggcaaattgcacttttaaat
aaagatgaagaaatcgaaatttccaaaaaaattgaacttggtgaagatattatcatagat
gctttttgttccgtgccttatttgattgactttattttagattatcgtgaaccactgatc
aatagagaaagaagagtaaaagaacttttcaaaagctttgatgatgaagaaaaaaatgat
gataagcttgatgaactagaggacgaggatgaagaaaacgatgaagaattagaaaatgaa
gaagaaactcctaaaaaaacaagcaaaaaagaagatgaaagaactttaaaagtcatagaa
aaatttaaagctttagagaaggcaaaaaaagattggctaaaagtttctaaagataaagaa
agtggagatgaaattttagacaaacttggaattgcttttaagaaaaatattctaaaagaa
aagctgatggatctaggtccaacttctaaactcatcagtgaaattgtaaaatcaatggaa
actgccttaaaaagcgatgaagaattcgataaagaattaaaacgcctagaataccgtttg
ccaatgttttctgaagaattaaaaaatcgtcatgctaatatcttaaaagatattacaaaa
ttaagcaaggaagaaattaccgaaagagcgcttgaaacgactatggtaagcacttacatg
gagataaaaaaactttttcaaactaaagaagcgagcgagaaaagctttgacttagaaaaa
gagcgcttgaaagaaattttagagcaaatcaaacgaggtaaaaaaatttctgatgaagct
aaaactagaatggctaaatcaaatttgcgtcttgttgtaagtattgctaagcgttataca
aaccgtggtttaccttttttagatcttatccaagaaggcaatataggtcttatgaaagca
gtggataaatttgagtacaaaagaggatataaattttcaacctatgcaacttggtggata
agacaagctatttcaagagcgatcgcagaccaagctagaactataagaatacctattcat
atgatagaaaccatcaatcaaatcaataaaattatacgcgagcatttgcaaaaagacgga
aaagagcctgatgtaagtgttatagccaaagaagtaggacttagtgtggataaggttaag
caagtgattaaaatcacaaaagagcctatttcacttgaggcgcctattggcagtgaagat
gatggcaaatttggggattttgtagaagatagaaattcactctcgcctatggatcacatt
ttaaaagatgatttaaaagagcaaattgatgaagttcttgatcaactaaacgatagagaa
aaagcagttattcgtatgcgttttggtctaatggacgatgaaagcgatagaactttagaa
gaaataggtaaagaattaaatgttacacgcgaaagagtaagacaaatagaaagctctgca
attaaaaaactcaaacatccaaaagtgggtagaaaactcaaaaactatatcgagggttgg
aagtaa
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