Conger conger (European conger): 133109634
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Entry
133109634 CDS
T10633
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b isoform X1
KO
K19719
collagen type II alpha
Organism
ccog Conger conger (European conger)
Pathway
ccog04510
Focal adhesion
ccog04512
ECM-receptor interaction
ccog04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
ccog00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
133109634 (col2a1b)
04518 Integrin signaling
133109634 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
133109634 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ccog00536
]
133109634 (col2a1b)
Glycosaminoglycan binding proteins [BR:
ccog00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
133109634 (col2a1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
133109634
NCBI-ProteinID:
XP_061075040
LinkDB
All DBs
Position
14:45200439..45276758
Genome browser
AA seq
1490 aa
AA seq
DB search
MFSFVDSRTVLLLVATQVVLLAVVKCQEEDDQEPGSCVQEGQRYSDKDVWKPQPCRICVC
DTGSVLCDDIICEELKDCPNPEIPFGECCPICPAVQSPPAGPVGAKGQKGEPGDITDVVG
PRGPGGPTGPPGEQGPRGDRGDKGERGSIGPRGRDGEPGTPGNPGPPGPPGPNGPPGLSG
NFAAQMAGGFDEKSGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEAGEPGSSG
PMGPRGPSGPSGKAGDDGEAGKPGKGGDRGPPGPQGARGFPGTPGLPGIKGHRGYSGLDG
AKGEAGAAGSKGEAGAPGENGAPGPMGPRGLPGERGRTGPSGAAGARGNDGLSGPAGPPG
PVGPAGAPGFPGAPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPAGASGNPGTDGING
AKGSAGGPGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGEHGPSG
PQGALGPAGEEGKRGPRGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPGG
VSGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAAGEDGRPGPPGPQGARG
QPGVMGFPGPKGGTGEAGKPGEKGLVGAPGLRGLPGKDGETGAGGPPGPAGLAGERGEQG
QPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGTAGATGPRGERGFPGERGGAGPQGLQG
PRGLPGTPGTDGPKGAIGPGGGPGAQGPPGLQGMPGERGASGIPGPKGDRGDNGEKGPEG
ASGKDGSRGLTGPIGPPGPSGPNGEKGESGPAGPHGAPGARGAPGDRGETGPPGPAGFAG
PPGADGQPGAKGEQGEGGQKGDAGAPGPQGPSGSPGPSGPTGVSGPKGARGAQGPPGATG
FPGAAGRVGPPGPNGNPGPAGPAGSAGKDGPKGVRGDGGPPGRQGDAGLRGPAGASGEKG
EPGEDGPPGADGPSGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGAGDRG
PPGPVGPPGLTGPAGEPGREGNPGSDGPPGRDGSTGIKGDRGNTGPVGAPGAPGATGAPG
PVGPTGKQGDRGEAGAQGPAGPSGPAGARGMAGPQGPRGDKGEAGEGGERGQKGHRGFTG
LQGLPGPPGQGGDQGAAGPAGPSGSRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGETG
PSGPPGNPGPPGLPGPPGPGIDMSAFAGLSQLEKGPDPMRYMRADQAAGGLRQHDAEVDA
TLKSLNNQIENIRSPEGSRKSPARTCRDLKLCHPDWKSGDYWIDPNQGCTIDAIKVFCNM
ETGETCVYPNPSKIPRKNWWSSKSKDRKHVWFGEAMNGGFHFSYGEDSLTASTASIQMTF
LRLLSTEASQNLTYHCKNSVAYLDRASGNLKKALLLQGSNDVEIRAEGNSRFTYSVLEDG
CTKHTGQWGKTVIEYKSQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattccaggactgtactgctacttgtagcaactcaagtcgttcta
ttagccgttgtcaaatgtcaggaagaggatgaccaggagccgggcagctgcgtccaagaa
ggccagcgctatagcgacaaggacgtgtggaagccgcagccatgtcgcatctgcgtgtgc
gacactggaagcgtcctctgcgacgatattatctgcgaggagctaaaagactgccccaac
cccgagatcccgttcggggagtgttgtcccatctgcccggctgtccagagcccacccgct
ggaccagttggtgccaagggacagaaaggtgaacccggtgacatcacagatgttgtagga
ccgagaggaccaggagggcccacgggaccaccaggagagcaggggcctcgcggagacaga
ggagataagggagagaggggaagcattggtccccgtggaagagatggagagcctggtacc
cccggaaaccctggaccccccggacctccaggacccaatgggcccccaggcctcagcggg
aactttgcggctcagatggcgggtggattcgatgagaagtctggaggagcgcagatgggc
gtgatgcagggaccgatgggcccgatgggtcccagaggaccgcccggaccatcaggagcc
cctggcccgcaaggtttccaaggcaaccccggagaggctggcgaacctggatcatctggc
ccgatgggtccccgtggcccctctggaccttctggaaaagctggagatgacggtgaagct
ggaaagccgggtaaaggtggtgatcgtggacctcctggccctcagggagctcgtggattc
ccaggaacccccggtcttcccggaatcaagggacacagaggatactccggtctggatgga
gctaagggagaggctggggctgcaggttccaagggtgaggctggtgctcccggggagaac
ggtgcccctggaccaatgggcccacgtggtctgcctggtgagagaggtcgcactggacct
tctggagctgctggtgctcgtggtaacgatggattatctggccctgctggtccacctggg
cccgtcggacctgctggagcccctggattccctggtgcccccggatctaagggcgaagct
gggcccactggagcccgtggacccgagggagcccagggacctcgcggagagtcaggcacc
cctggatcccctggccctgctggcgcctctggtaaccctggtactgatggaatcaatgga
gccaaaggatctgctggtggtcccggtattgctggggcccctggtttccctggtccacgc
gggccccctggacctcagggagccaccggccctctcggccccaaggggcagtcgggtgac
cccggtatcccagggttcaaaggggaagctggacctaaaggagagcacggtccttccggg
ccccagggtgccctaggacctgcaggagaggaggggaagcgagggccgagaggagagcca
ggcgctgcagggcccttggggccccctggagaacggggtgctcctggtaaccgtggtttc
ccaggtcaggatggtctggctggtccgaagggtgctccaggtgagagaggacctggcggt
gtttctgggcccaagggtgccaacggtgacccaggacgccctggagagcccggtctgccc
ggggcaagaggtcttactggtcgccccggtgacgccggtcctcaaggaaaagttggtcca
tctggtgctgctggagaggacggccgccctgggcccccaggaccccaaggagctcgcgga
cagcccggcgtgatgggattcccagggcccaagggtggcacgggagaggctggtaaacca
ggagagaagggtctggtcggagctccaggtctgagaggtctgcctgggaaagacggggag
actggtgccggaggccccccaggacccgccggactcgcgggagagagaggagagcagggt
caacccggaccttctggcttccagggtctacctggacccccaggtcctccaggggaagga
ggcaagcccggtgaccagggtgtgccaggagaggcggggacagctggtgctacaggtccc
agaggcgagcgaggtttcccaggagagagaggcggcgccgggccccagggtcttcagggc
ccacgaggtctgcctggaactccagggaccgacggacccaagggagccatcggccccggc
ggtggccctggagcccagggccccccgggcctgcaggggatgcccggagagagaggagct
tccggaatcccaggacccaagggcgacagaggcgacaacggcgagaaaggacctgagggc
gcttctgggaaagatggctccaggggtttgactggtcccattggcccccccggcccatct
ggtcctaatggagagaagggagaatctggacctgcggggccccatggagctcctggtgcc
cgtggcgcacctggtgaccgtggtgagactggacccccaggaccagctggtttcgccggt
ccccctggtgcagatggacagcctggagcgaagggggagcagggcgagggcgggcagaag
ggtgacgctggggcccccggcccccaggggccctcagggtcccccggaccttccggcccc
actggtgtttctggacccaaaggtgcccgtggggctcaaggcccacctggtgccactggt
ttccctggtgctgctgggagagtcggacctccaggccccaacggtaaccccggtcccgcg
ggtccagccgggtccgcaggtaaagacggtccaaaaggtgtccgtggagacgggggtcct
cctggtcgtcagggagatgccggactgcgtgggccagcgggagcctccggagagaaggga
gagcctggagaggatgggcctcctggtgctgatggtccatcgggaccccaggggctggct
gggcagcgtgggatcgtgggtctgccagggcagcgtggagagagaggattccctggcctt
ccgggaccttccggcgagcctggcaaacaaggcgctcctgggggagctggagaccgtggc
ccccccggccccgtcgggccccctggactcacgggacctgctggagagcccggcagagag
ggtaaccctggctctgacggaccccctggtagagatggttctactggaatcaagggcgat
cgcggtaacacaggcccagttggagccccaggagcccctggagcgacaggtgccccaggt
cccgtcggccccacaggcaaacagggcgacagaggagaggcgggcgcacaaggacctgca
ggaccttctggacctgccggagctagaggaatggctggaccccaaggaccacgtggagat
aagggtgaggcaggtgagggtggagagaggggacagaaaggacacagaggcttcaccgga
cttcagggcctgcccggacctcccggtcagggcggtgaccagggtgcagctggacctgct
ggccccagtggatcgagaggacccccaggcccggtcggcccctcaggaaaagacggatcc
aacggcatgcccggcccaatcgggccccctggacctcgtggtcgctctggggagactggt
ccttctggtccccctggtaaccctggccccccaggcctgcccggccccccaggacccggc
atcgacatgtcggccttcgcaggcctgtcccagctggagaagggcccggaccccatgcgc
tacatgagggccgaccaggccgccgggggcctccggcagcatgacgccgaggtggacgcc
acactcaagtccctcaacaaccagatcgagaacatccgcagccccgaggggtcccgcaag
agccccgcccgcacctgcagggacctcaaactctgccacccggactggaagagcggagac
tactggatcgacccgaaccagggctgcacgatcgacgccatcaaggtcttctgcaacatg
gagacaggagagacgtgcgtctaccccaacccatccaagatcccgcgcaagaactggtgg
tccagcaagagcaaagaccgcaagcacgtctggttcggcgaggccatgaacggagggttc
cacttcagctacggtgaggactccctgaccgccagcacggccagcatccagatgaccttc
ctgaggctgctgtccacggaggcgtctcagaacctgacctaccactgcaagaacagcgtg
gcctacctggaccgggccagcgggaacctgaagaaggctctgctgctgcagggatccaac
gacgtggagatcagggccgagggcaacagccgattcacctacagcgtgctggaggacggc
tgcacgaaacacacgggccagtggggcaagacggtgatcgagtataaatcccagaagacc
tcccgcctgcccatcgtggacatcgctcccatggatatcggaggagcggaccaggagttt
ggggtcgacgtcggcgcggtctgcttcttgtaa
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