Conger conger (European conger): 133115458
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Entry
133115458 CDS
T10633
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ccog Conger conger (European conger)
Pathway
ccog03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccog00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133115458 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccog03019
]
133115458 (xab2)
03041 Spliceosome [BR:
ccog03041
]
133115458 (xab2)
Messenger RNA biogenesis [BR:
ccog03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
133115458 (xab2)
Spliceosome [BR:
ccog03041
]
Complex B
Other components
Prp19-related factors
133115458 (xab2)
Complex C
133115458 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_8
TPR_12
TPR_15
TPR_16
ARM_TT21
ARM_TT21_C
SNAP
NRDE-2
RPN7
TPR_1
Tcf25
LTN1_E3_ligase_6th
DUF4515
Motif
Other DBs
NCBI-GeneID:
133115458
NCBI-ProteinID:
XP_061081349
LinkDB
All DBs
Position
16:20257574..20267117
Genome browser
AA seq
850 aa
AA seq
DB search
MPSLTDKPEVIFEEDDLPYEEEIIRNPYSVKCWMRYIEYKQNGPKSVLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCITEPGFEEVNNCHERALVFMHKMPRIWLDYCQFLVSQCK
ITRSRRTFDRALRALPITQHPRIWPLYLRFARNLPLPETAIRVYRRYLKLSPENAEEYID
YLRSVHRLDEAAVRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVKSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHLEKARDVYEEAVQTVVTVRDFTQVFDSYAHTEET
VIAAKMETTAEMGQDEEEDIDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGKPRQIINTYTEAVQTVDPMKATGKPNSLWISFAKFYEENEQLDDARTIFEKATKVN
YKQVDELAGVWCEYGEMELRHENYEQALHILRKATAIPSKKAEYFDSSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
FGLARHAMAVYERATEAVETTERHHMFNIYIKRAAEIYGVTHTRAIYQKAIEVLPDEHSR
EMCQRFADMESKLGEIDRARAIYSYCSQICDPRMTPAFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATANATGTVSDLAPGQSGVDDMRMLEQKAQQLAAEAEQ
DKPRPKDKILFVRSDTSRTELAELAKQANPDEIDIDDEDDEEEDEGGEPEEVQLEQKSVP
TAVFGGLKQD
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgccgtctttgacagacaagccggaggttatatttgaagaggatgacctgccatacgaa
gaagagatcatccggaacccgtactccgttaagtgttggatgcgttatatcgagtacaaa
cagaatggccctaaatctgtgctgaacatgatatacgagcgagcgctgaaagagctgcct
ggaagttataagttgtggtataattacctgagagagaggaggaagcaggtgaagggaaag
tgcatcacagagccgggttttgaggaggtcaacaactgtcacgagagagcgctggtgttt
atgcacaagatgcccagaatctggctggattactgccagttcctggtgtctcagtgcaag
atcacacggagccggcgcaccttcgaccgcgccctgcgtgccctgcccattacccagcac
ccccgcatctggcccctgtacctgcgtttcgcccgcaacctgccccttcccgagacggcc
atccgcgtgtatcgccgctatctgaagctttccccagagaatgctgaggagtacatcgat
tacctgcggtctgtacaccgcctggacgaagcggcggtcagactggcagccgtcgtcaac
gacgagagctttgtgtccaaggaggggaagtccaactaccagctatggcatgagctgtgt
gacctgatctcccagaacccagacaaggtcaagtccctgaatgtgggggctattatccgt
ggcggcctgacccgcttcactgaccagctgggaaaactctggtgctccctcgcagactac
tacatacggagcgggcacctggagaaggcgcgggacgtgtatgaagaggccgtccagacg
gtggtgacggtgcgggacttcacccaggtgttcgacagctacgcccacaccgaggagacc
gtcatcgctgccaagatggagaccactgctgagatgggccaggacgaagaggaggacatt
gacctggagctgcggctggcacgctttgagcagctgattgcgcggcgccccctgctgctg
aacagcgtgctactccgccagaacccccacaacgtccacgagtggcacaagagggtcaag
ctgtacgagggcaaaccgcggcagatcatcaacacgtacacggaggcggtgcagacggtg
gaccccatgaaggctacggggaaacccaactcgctctggatctctttcgccaagttctac
gaggagaacgagcagctggatgatgctaggaccatctttgagaaggccacgaaggtgaac
tataagcaggtggacgagctggcgggggtgtggtgtgagtacggggagatggagctgcgt
cacgagaactacgagcaggctctgcacatcctgaggaaagccaccgccatcccgtccaag
aaggccgagtacttcgactcctccgagccggtgcagaaccgcgtctacaagtccctgaag
gtgtggtccatgctggctgacctggaggagagtctgggtacatttcagtccacaaaggcg
gtgtatgaccgtatcatcgacctgcgcatcgccacgccccagatcatcatcaactatgcc
atgttcctggaggagcataactactttgaggagagcttcaaggcctacgagcgaggcatc
gccctcttccgctggcccaatgtctacgacatctggaacacctacctcaccaagttcatc
gaccgctacggaggcaagaagctggagagggcccgggacctgtttgagcaggccctggac
ggctgccctgccaaatttgccaaaacgatatacctgctgtacgccaagctggaggaggag
tttgggctggcgcggcacgccatggcggtctacgagcgggcgacggaggcggtggagacg
acggagaggcaccacatgttcaacatctacatcaagagggctgcagagatctacggagtc
acacacacccgagccatttaccagaaggccatcgaggtgcttccagatgagcactccaga
gagatgtgccagcgttttgctgacatggagagcaaactgggcgagattgaccgggcgaga
gccatctattcctactgctcccaaatctgtgaccccaggatgacccctgcattctggcag
acctggaaggagtttgagatccggcacgggaacgaagacaccattcgggagatgctgagg
atcaagcgcagcgttcaggccacgtacaacacgcaggtcaacttcatgtcctctcagatg
ctcaaggccaccgctaatgccactggaaccgtgtcagacctcgctccagggcagagtgga
gttgacgatatgaggatgttggaacagaaggctcagcagctggcagccgaggcggagcag
gacaagccccggcccaaagacaagatcctcttcgtcaggagtgacacctctcgcaccgaa
ctggctgagcttgcgaagcaggctaaccctgacgaaatagacattgatgacgaagatgat
gaggaagaggatgaaggtggtgaaccggaagaggtgcaactggagcagaagagtgtcccc
acagctgtgtttggggggttgaagcaggattga
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