Conger conger (European conger): 133116807
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Entry
133116807 CDS
T10633
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
ccog Conger conger (European conger)
Pathway
ccog03013
Nucleocytoplasmic transport
ccog03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccog00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
133116807 (upf3a)
03015 mRNA surveillance pathway
133116807 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccog03019
]
133116807 (upf3a)
Messenger RNA biogenesis [BR:
ccog03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
133116807 (upf3a)
mRNA cycle factors
P-body specific factors
133116807 (upf3a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
DUF6980
Motif
Other DBs
NCBI-GeneID:
133116807
NCBI-ProteinID:
XP_061082759
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All DBs
Position
17
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AA seq
489 aa
AA seq
DB search
MRAENDFLIEGGERKNVDIQFRDLPREQDSVTTNPKPKEEKKEVFTKVILRRLPPSLSKD
QLEEQISPLPAYDYFEFFSADQSLYPHLFCRAYINFKNPEDIVHFRDRFDGYVFIDNKGQ
EYPAIVEFAPFQKVSKKKLKKKDAKAGSIEEDPEYRRFLENYCCDEEKVTANPETLLGEI
EAKTRELIAQRSTPLLEYIRNKKLEKQRIREEKREERKRREEEKRKRREEEKRKRREEER
RKRKEAEKQKKLAEKEIKFKLLKKCEQDEDVDSDRLKDRGDSGDADTTKLDKTSAHTKAK
HPDKDAKDKGQTESDREQRDHGRRPREKEPGGERHRGREETRKRQRHHYEFDKFMRRKEE
TKWGKGYCQDRAKKEGLPHHAYGPCPDPGAEKPAKGGREDAASRKERIRNKSVLAHQEKR
TSQSQGPDQIAGAVEAKDRPTMQLYQPGVRSRTGAGSGVADCFSTSPEWGAEPRYEVVMG
TGSEKSGDE
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgagggcggaaaatgactttctgatcgaaggcggggaaagaaaaaacgtcgacatacag
tttagagaccttccaagggagcaggacagtgtcacgacaaaccccaagcccaaagaagag
aaaaaagaagtttttacgaaggtaattcttcggcgattgccacccagtctatcaaaggac
caactggaagagcaaatcagcccgttacctgcttacgactattttgaattcttctcagcc
gatcagagcctttatccccacctcttctgtagagcatacattaatttcaaaaacccagaa
gatattgttcacttcagagaccgatttgatggctatgtattcatcgataacaaaggtcag
gaatatccggccattgtagaatttgcacccttccagaaagtgtcgaagaagaagctgaaa
aagaaagatgccaaggcaggaagcattgaggaagatccggagtacaggaggtttttggaa
aactactgctgtgatgaagagaaggtgacggcaaacccagaaactctgctgggagagatc
gaggccaagaccagagagctcatagcccagagaagcacaccgctcctggagtacatcaga
aacaagaagctggagaagcagagaatccgggaggagaagcgggaggagaggaaacggaga
gaggaggagaagaggaagcggcgggaggaggagaagaggaagcgcagggaggaggagagg
agaaagcgcaaggaggccgagaagcagaagaagctcgccgagaaggaaatcaaattcaaa
ctgctgaagaagtgtgagcaggacgaggacgtggactcagacaggctgaaggaccgcgga
gacagtggagacgcagacactaccaaactggacaaaacctcagcacacaccaaggccaaa
cacccggacaaggacgcaaaagacaaaggccagacagagagcgacagggagcagcgggat
cacgggcgcaggccgcgggagaaggagccgggcggggagagacaccgcggccgcgaggag
acgcggaagcggcagaggcaccactacgagttcgacaagttcatgcgccgcaaggaggag
accaagtggggcaagggctactgccaggaccgcgccaagaaggaggggctcccgcaccac
gcgtacgggccctgccccgacccgggcgcggagaaaccggccaagggcggccgggaggac
gcggccagcaggaaggagcggatccgcaacaagtctgtgttagcgcatcaggagaaacgg
acctcccagtcccaggggccagaccagatagcgggggctgtggaagccaaggaccggccc
acgatgcagctgtaccagccaggagtgcgcagccgcaccggggcggggtcgggggtcgcg
gactgcttcagcacctccccggagtggggggcggagcccaggtacgaggtcgtcatggga
accggctcggagaaaagcggggacgaatag
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