Conger conger (European conger): 133118083
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Entry
133118083 CDS
T10633
Symbol
col17a1b
Name
(RefSeq) collagen alpha-1(XVII) chain isoform X1
KO
K07603
collagen type XVII alpha
Organism
ccog Conger conger (European conger)
Pathway
ccog04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
ccog00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
133118083 (col17a1b)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Collagen
WBP-1
Motif
Other DBs
NCBI-GeneID:
133118083
NCBI-ProteinID:
XP_061083766
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All DBs
Position
18:12238324..12275412
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AA seq
1597 aa
AA seq
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MDYLNTRNRHLSGGSSGLSTNVMTENVTTTTRLTSLPPTSGGFSVSSTGGGYGAGSGGGF
SAGSGGGFGTGSGSGLGTGFGYSVVSGGGSGGGSGGGTGGGSRSGTRTTSGSFSMVTKGG
SSSSVSGGGRRGPAYSPAFIERKTIISQSGGYEGSSSGNSSPEYTRKEYVAASSSSSRGR
TASRESEIRARLQSASPSTRWTELEDVKKLLKGSRSCSVSPTRTTSDTLPIPKKGSVETR
LITEGSQSAVLTQYDATVLDSVQPSYVWTTSSLPSGFASIAAPNYSTSPKNMSPESTLLP
SPPLPSLSVSGVRNNMTSSPPPLTGGLSSSSAVYGVQNNLATTSGSAFTSSGINSHAGYG
VQKNMSQTVSSAVSASTASAVRSHSEESYLKDFKFLLLEKENIPQSRKDDDMPVIMAKDS
GKNFCSAPPSRIPKGSFSDDSLKKEKMAPSYAETPIKAETNGLYASQKAPKKDKAMYAET
EKDGGGGGGGGWCCGDSCCSWWKWLLGLLLGLLLLLGLLCGLIALAEQLRKLTTRVDTLE
RASMAARASRLEAEANADAFARRSGSSASGRSLDLGAAAVTDTASLENLMRKLIQAELHS
DTFRATLSSSLKGERGEQGPKGDAGVTGLKGDAGFPGIPGSPGHVGSEGQKGQKGQTGES
GVEGPPGLKGREGPVGPRGDTGPPGFGQKGDKGSSGDSGIPGVPGTTGPVGPKGAPGGHG
TNGRPGEPGTPGFRGNVGPSGPKGDSGSPGLSGQKGDPGDKGYRGSAGDPGLPGVTGSPG
EKGAKGNAGAHGSDGEKGARGDQGQMGPPGIRGPAGPQGDVGPPGTPGLQGPPGIAGNPG
QPGAKGPAGEPGKIINAGAGSNSVSIPGPPGSPGPAGPAGSPGLSGPIGPAGLPGQIGPR
GDKGDKGDKGDKGERGDQGEAGISVTTSRQLEAVRDGAPGKPGQPGQPGQPGQAGPPGPP
GPPGPAGTPGSYNYAGEPRSGARGPQGPPGPPGPPGEPGVGLPGPRGERGEPGRHVGTAE
THYSGYSGPAGPPGPPGVPGSPGSPGSPGAPGQKGSQGNQGARGYQGEAGPPGAPGIPGS
TYGDSGRGSPGAPGPPGPVGPMGARGHVGPQGTKGDAGVPGAPGIPGSSRGGGSSTRTVQ
GPAGPPGPPGPAGRDGYGGTDFRQYLAEYFQSDTIRSSLIGPQGPPGPPGTPGLSGHSME
DLAPRVIAYIQRSGYISGAPGPPGPPGAPGSMSVNDIILLLQRDEVRRYVTGPPGPPGPP
GSGGGYVSYDTKELAERVLRLMNERGMLNIQGPPGAPGSPGSPGLPGSYGDITTLLQRPE
FHGLRGPPGPQGNTGPPGPPGAAGSSTGTSSYSLEDIRQYLQNSGFKCPPGPPGPQGPQG
PPGDTPSFVSLTENTQSSSQIRTQLQEYLRSDSMRQFIIGPPGAPGHPGPKGDRGEPGYS
HTQSSSHRYSHGSQRTESLDYSNVAVKVTDYIKTQGLLQDVIYDVTRRVQSGGVQGPPGP
PGPPGPPGHSQSHGSYGNMTQLIDYIKLHGSIAGSPGRPGQKGERGYTGPRGEKGDMGPQ
GFRGETGIPGYHGQKGEKGESLVVVSKRVRKRRSVGV
NT seq
4794 nt
NT seq
+upstream
nt +downstream
nt
atggactatttaaacacaagaaacagacacctttctggtgggagctccgggctctcaacc
aacgttatgacagaaaatgtaacgacgacaacgagactaacgtcactgcctccaacttcc
ggagggttctctgtaagctccactggaggtggatatggggcagggtccggaggcgggttt
tccgcaggatctggaggtggatttggaacggggtctggaagcggactcggaacggggttc
gggtattccgtagtgtctgggggcgggtccggaggcgggtccggaggcggaactggagga
ggttccagaagtggcaccagaacgacctcggggtccttctccatggtaacgaaggggggg
tcctcctcctcagtgtccggggggggaagaaggggcccggcctattccccagccttcatc
gagaggaagaccatcatcagccaatcaggcgggtatgaaggaagttctagtgggaattcc
tcaccagaatacacaaggaaagagtatgttgctgccagctcctcatcatccagagggagg
accgcgagcagagagagtgaaataagagccagattgcagagtgcatctccatccaccaga
tggaccgagctggaggacgtgaagaagctgctgaagggcagccgctcctgcagcgtgagc
cccacccgcaccacctccgacaccctccccatccccaagaagggctctgtggagaccagg
ttgatcaccgagggctcgcagtcagcagtgctgacgcagtatgacgccacggtgctggac
tctgtgcagccctcctatgtgtggaccacctccagcctgccctctgggttcgccagcatc
gccgctcccaactactccaccagccccaaaaacatgtccccggaatccaccctcctgccc
tccccacccctaccctcgctgtcagtttccggtgtccggaacaacatgacatcctcaccc
cctcctctgaccggtggcctgtccagcagcagtgcagtgtatggtgtgcagaataacctg
gctacaacctccggcagtgccttcacttccagtgggattaactcacatgcaggttatggg
gtacagaagaatatgtctcagacagtcagctctgctgtctccgccagtacagcctctgca
gtcaggagccacagtgaggagtcctacctaaaagacttcaagttcctgctgctggagaag
gagaacattcctcagagcaggaaggacgatgacatgcccgtcatcatggctaaggacagc
gggaagaacttctgcagcgcccctcccagcaggattcccaaggggtcattttcagacgac
tctctgaagaaagagaaaatggcacccagctatgctgaaactcccattaaagccgaaaca
aacggattgtatgcatcccaaaaagcgccaaaaaaagacaaggcaatgtatgcagagacc
gaaaaggatgggggtggaggtgggggtggagggtggtgctgtggagactcctgctgcagc
tggtggaaatggctgctgggcctgctcctgggtctgctgcttctcctgggcctcctgtgt
ggactcatcgcgctggcggagcagttgaggaaactgaccaccagggtggacactctggag
cgggcctctatggcggcccgagccagccgactcgaggccgaggccaacgccgacgccttc
gcgaggaggagcggctcgtccgcctcggggaggagtctggacctgggcgccgcggccgtc
acggacaccgccagcttggaaaacctcatgcggaaactcatacaggccgagctgcactcc
gacacattcagagccacactctcttcatctctcaaaggcgaaagaggggaacaaggaccc
aaaggtgacgcaggtgttacgggactcaaaggtgacgctggtttcccaggaatcccaggt
tctccaggacatgtagggtcagaaggacaaaaggggcaaaagggtcaaacaggggaatcc
ggagtcgagggcccacctgggctgaaggggcgagaggggccagtggggccccgtggagac
accgggcccccaggatttggccaaaagggagataaaggctccagtggtgattcaggcatt
cctggggtccctggaaccactggccctgtggggcccaaaggtgcaccaggtggtcatggt
acaaatggtcgaccaggtgaacccggtactccaggtttccgtggcaacgttggcccttct
ggaccaaaaggagacagtggctcgccagggctttcaggacaaaaaggagatccgggtgat
aaaggttatcgaggttctgcaggagacccaggattgcctggagtcacaggatcacctgga
gagaaaggggccaaaggaaatgcaggagctcatgggtctgatggagagaagggtgccaga
ggtgaccaaggacagatgggaccgcctggaattcgcggtccagctggacctcaaggcgat
gttggccctccaggaactccggggctacaaggaccaccagggatagcaggaaatcctggg
cagcctggagctaaaggcccagcaggtgaacctggaaagatcattaatgcaggcgccggc
tctaactctgtgagtattcctggaccccctgggagcccaggaccggctggccctgctggg
tccccaggactgtcaggacccattggccctgctggacttcctggtcagattggtccaaga
ggtgataagggagacaagggagacaagggagacaagggagagaggggtgaccagggagag
gctggaatctccgtgacaactagcagacaacttgaggctgtcagagatggtgcccccgga
aaaccaggacaaccaggtcaaccaggacagccagggcaagcggggccccccgggccccct
ggacccccggggcctgcaggaacgccaggctcctacaactacgcaggagagcccaggtca
ggtgcacgtggtccccagggtccccccggccccccaggtcctccaggagagccaggtgtg
ggattaccgggccctaggggagaaagaggagagcctggaagacatgtgggcacagctgaa
acccattactctggatactctggacctgctggacctccaggacctcctggtgtccctggg
tctccaggctcccccggctctcctggggcacctgggcagaaaggatcgcagggtaaccaa
ggagcaaggggatatcaaggggaagcaggcccacctggtgctccagggattccaggcagt
acctacggagattcaggacgaggttctccaggggcacctgggcctccgggaccagtcggt
ccgatgggagcgaggggccatgttggcccgcagggaactaaaggcgatgctggagtgcca
ggtgctcctgggatacctgggtcttcaagaggagggggttcaagcacaagaactgtccag
ggcccagccggccctcctgggcccccaggacctgcagggagagatgggtacggcgggaca
gatttccgtcagtacctggcggagtacttccagagtgatacgatcaggtcatctctgatc
ggcccccaggggccccccggcccccccgggaccccaggtttaagtgggcactcgatggag
gacttggcgccccgtgtcattgcctatatccagaggtcaggttacatcagtggagcccct
ggacccccaggccctcctggtgcccctggctccatgtccgtcaatgacatcattctgctt
ctacagagggacgaagtgcgtcggtatgtgacaggcccccctggcccgcctggccctcca
ggaagtggtggcggttatgtctcttatgacaccaaggagctggccgagcgtgtcctaagg
cttatgaacgaacgtgggatgctgaacatacaaggacctccaggggctcccggatctcct
ggatctcctggcctgcctggctcctatggtgacatcactaccctgcttcaaaggcccgag
tttcatgggttgaggggcccaccggggccccaggggaacactggccctccaggaccccca
ggcgcagcaggatcgtccacaggcacctcgagttacagcctggaggacatccggcagtac
ctgcagaattctgggtttaagtgtccccctggacctcctggcccccagggccctcagggg
cctcctggggacaccccgagctttgtgtccctgacggaaaacacgcagagcagcagtcag
attcgcacccagctccaggagtatctcagaagtgacagcatgcggcagttcatcatcggg
cccccaggggcccctggccacccgggaccgaaaggggaccgcggggagccaggctacagt
cacacccagagctccagccaccgatactcccacgggagccaacggacggagagcctggac
tactctaacgtggccgtgaaggtgaccgactacatcaagactcagggtctcctacaggac
gtcatctatgatgtcactcgacgtgtacaatcagggggggtccaaggtcccccagggccc
cccggacctcccggccccccaggacacagccagtcccatgggtcctatggcaacatgaca
cagctcatagactacataaagttgcacggctccatagcaggctctccggggcgaccaggg
cagaaaggagagaggggatatactggacccaggggagaaaaaggtgacatgggaccacaa
ggctttcggggagaaacaggaataccaggctaccatggacagaagggtgagaaaggagag
tcgctggtggttgtgagtaagagggtgaggaagaggagaagtgttggtgtttaa
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