Conger conger (European conger): 133125035
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Entry
133125035 CDS
T10633
Symbol
pcdh20
Name
(RefSeq) protocadherin-20 isoform X1
KO
K16498
protocadherin delta 1
Organism
ccog Conger conger (European conger)
Pathway
ccog03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
ccog00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
133125035 (pcdh20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ccog01009
]
133125035 (pcdh20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ccog04515
]
133125035 (pcdh20)
Protein phosphatases and associated proteins [BR:
ccog01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
133125035 (pcdh20)
Cell adhesion molecules [BR:
ccog04515
]
Cadherins
Protocadherins
133125035 (pcdh20)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_FAT4_N
Ig_Cad99C_N
Cadherin_CELSR2_9th
Cadherin_2
Ig_CLSTN
Motif
Other DBs
NCBI-GeneID:
133125035
NCBI-ProteinID:
XP_061092710
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All DBs
Position
3:complement(23742787..23747515)
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AA seq
863 aa
AA seq
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MGTCAVRKDQGICVNMSKSTSLQKVLGLVLLQQMLCSSAATHLSIQEEQPEGIKIGSIAQ
DFLPPYHLLTSDKHTRLDTQTGDLYTTAHTIDRETLCPQQPTPTGPCLIQQLVLAHDVVV
KVTVEVEDINDNSPHFPEDEVRLSVPEDVAVGTSFLLDDQAQDDDTGSNGQLWYHLDDPD
GFFSAEEAGQSLVVVVRRTLDREVRDTHRLTVVTTDRGVPSQSSTATLVVEVTDINDNCP
AFRLDSPKSILVPMDAPRGTAVIRVRAMDPDLGPNSIITYSFSPKTSDKSRELFSLDSDS
GQITLAGTIDSDGPAEYILRVLASGPSCPPAVTQVTVSVLAASSQRPVMKIRYIAELREG
AILIKENQPPTVLALLELEGASPVKGAPSIAGEVPFLLRPQTGNYLLLTSKPLDFEQKSK
YHVSIQVRDSRLPGGGEEMVITVLVQDVNDNAPQFQLPHYQVDVEENNAPGTTIAHIRAA
DIDSMQNGEVAYRLSLHTASMFSIDPGTGRVSVSVALDREQQEFHNFTVLARDNGSPALE
STTSVSVHVLDQNDNEPVFTTTNFIFFIPENFPRLGQVGVVPVRDPDAGVNGQVEVQVVN
GSGPFMMDNARGTLRCVAEVDREVQDRYELWLVAQDGGHPPHSSTARVTVFVEDINDNRP
KVILPSTNLSCLTVSPTMHTGATVTKIYAIDKDSGINGDISYRMVASEPHSPFLIDARSG
NVTLAQRLLIRDHRLHHLFIVVSDGGEPTPLQSAVWVNLLVNETEGPCTLSTVPIPAPAH
FTHRPPKKTTCEEDQSGIKNAKTTLLVGLGMLVCSAIMLLGAAILFIKQRALRRSHQKLA
SKGSEIPLRLKETYHTVDWADVQ
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atgggaacatgtgctgtgagaaaggaccaggggatatgtgttaacatgagcaagagcact
tcactgcagaaagttctgggcctagttctgcttcagcagatgctgtgcagcagtgcagcg
acccacctgtctattcaggaggagcagcctgagggcatcaaaattggatcaattgcccaa
gactttctgccaccgtatcatctcctgacgtctgataagcacacaaggctggacacacag
acaggagacctgtacaccaccgcacacaccattgaccgggagacactgtgccctcagcag
cccaccccaacggggccatgtctgatccagcagctcgtcttggcccatgatgtggtcgtt
aaggtcaccgtggaggtagaggacatcaatgacaactccccacacttcccagaggatgaa
gttcgcctcagcgtgccggaggatgtagccgtggggaccagtttccttctggatgaccag
gctcaggatgatgacacaggcagtaacggacagctgtggtaccacctggatgatcctgac
gggttcttcagcgcagaagaagcgggtcagtcgctggtggtggtggtgagacgcacactg
gaccgggaggtccgggacacccatcgcctgactgtggtcacaaccgaccgcggggtcccg
tcacagagcagcacggccactttggtcgtggaggtgacagacatcaacgataactgccca
gcgttccgccttgacagccctaaatccatcctcgtcccaatggatgcacctaggggcacg
gcagtaatccgtgtcagggccatggaccccgaccttggccccaatagcataattacgtat
tcattcagtcccaagacctccgacaagtccagggagctgttctccctggacagtgacagt
gggcagattactctagccggcactattgacagtgatggccccgctgagtatattctgaga
gtcctggccagtggcccatcctgcccccctgctgtgacacaggtaactgtatctgtgctt
gcggcatccagccagaggccggtgatgaagatcaggtacatagcagagcttcgagaaggg
gctatactgataaaagagaaccagccccccacagttctggccctcctggagctggaaggt
gcgtcccctgtcaaaggcgccccatccattgcaggggaggtgccttttttactgagacca
caaacgggaaactacctcctgctaacatcaaagcccctagactttgaacagaaaagcaaa
tatcacgtttccattcaggtcagagacagccggctccctgggggaggcgaggagatggtg
atcacggtcctagtgcaggacgtcaatgacaacgccccgcagttccagctgccccattat
caggtggatgtggaagagaacaatgcacccgggacaaccattgcgcacatcagagcggcc
gatattgacagcatgcagaacggagaagtggcttacaggctgagccttcacacggcatcc
atgttcagcatcgaccctggaactggccgggtgtcagtgtcagtcgctcttgacagggaa
caacaagagttccacaatttcactgtgctggccagggacaatggctctcccgctctagaa
tctaccaccagtgtgtccgtccacgtgctggaccagaatgacaacgagcctgtcttcacc
accacaaacttcatcttcttcatcccagaaaacttccctcgcctgggccaggttggagtg
gtgcctgtcagggacccagatgctggggtcaatgggcaagtggaggtccaggtggtaaat
ggcagcggccccttcatgatggacaacgcccgggggactctgcgctgtgtggccgaggtt
gaccgtgaggtgcaggaccgctatgagctgtggctcgtggcccaagacggtggccatccc
ccacactcctccaccgcccgggtcactgtctttgtggaggacatcaacgacaaccggccc
aaagtgatcctcccctccaccaacctgtcctgcctgactgtgtcccccaccatgcacacc
ggggctactgtcaccaagatctacgccatcgacaaagactcggggatcaacggtgacatc
agctaccgcatggtggcctcagagccgcacagcccgttcctgatcgacgcgcgatctggg
aacgtcactctcgcacaacgactgctgatacgtgaccacaggctgcatcacctcttcatc
gtggtgagcgatgggggagagcccacccccctacagtctgctgtgtgggtcaacctcctg
gtcaatgagacagaggggccttgcactctgagcactgtgcctattcccgcccccgcccat
ttcacacaccgacccccaaaaaagaccacctgcgaggaggaccagtcgggcattaaaaac
gccaaaaccaccctgttagttggccttggcatgttggtgtgctctgccattatgctactg
ggagctgccatattgttcataaagcaaagagcactacggagaagccaccagaaacttgct
tctaaaggtagtgaaatcccactgagactgaaggagacctaccacactgttgactgggca
gatgtccagtga
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