Conger conger (European conger): 133125798
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Entry
133125798 CDS
T10633
Symbol
rc3h1a
Name
(RefSeq) roquin-1a isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
ccog Conger conger (European conger)
Brite
KEGG Orthology (KO) [BR:
ccog00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccog03000
]
133125798 (rc3h1a)
04121 Ubiquitin system [BR:
ccog04121
]
133125798 (rc3h1a)
Transcription factors [BR:
ccog03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
133125798 (rc3h1a)
Ubiquitin system [BR:
ccog04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
133125798 (rc3h1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-C3HC4_4
zf-RING_2
zf-C3HC4_3
zf-C3HC4
zf-CCCH
zf-C3HC4_2
zf-CCCH_4
Prok-RING_4
zf-CCCH_UNK
zf_CCCH_4
NS3_helicase_C
FYVE
Baculo_IE-1
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
133125798
NCBI-ProteinID:
XP_061093397
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All DBs
Position
4:complement(58908644..58941508)
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AA seq
1130 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETVRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IEQLPVNSALLQLVGGQVPKLQPLTLLTGAEDTKHYDEARKCVEELALYLKPLGSTRGEP
HCTGVGLNSAAQSMLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQ
NPQQLSSNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRF
PQASKTSIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEG
GLRIAPDQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLR
PHLELLANIDPSPDAPPPTWEQLDKGLVAVKTVVHGLVDFIQNHSKKGSDQQQVSYPPQH
SKYKTYMCRDMKQKGGCPRGASCTFAHSQEELDKYRKVNKRLAARRPLSQSLTQLKEVGL
PCSPGMQQEDESMEVLGRKPSSLTNGIVAAGPGSPLTQLISRGADPAYNPGCKPVKIDAV
SLSAPGSPPDSLDTKVMAMNPHGLSHPRMESLSMHKQLPVVPRGPQMYPQQQPEMFYQES
RPPASASQYETSQYPAGNPYPYQSSQYVQRYIRNAPPPSEPGMPPYQDPYPGPYAPERPY
PAPQSGPPFSAMTQHVYPPHYDNRRHSPYAGPPPQPFAPRDEPVRMSPVPVDVPPPPPPP
AAGSPYLSESSRDRYPPEAYYPVGPHHNQMRPYARDPSRSQHSLDYLHRRRKEIMAQLEE
RKVISPPPFAPSPTLPHTFPTNYPQEYMEENPQAFGKCREPDYPGQYSPWSCDTIGSYIG
TKEVKSKDVMAGGAVEMMNVDNKGLREAAVDMQRRPAEAKDDDPIIPFGPLPTVSRFGAI
SRTSKTGYQTTGPVQAMASSQGSATKHITVAADYTYGNHGGWGGAPYPQHQNMTSQGHFS
ERLPIPAQDREQLKMELQQVNQQINQQTQVRSMEAVSSGLLLQREAGSLAAPPGPGEWSA
GSVSSEQLSLELHHVEREIGKRTREIAMENHVAHDVKYKLKAAENGQPDHKVQRDDHPMT
LSEGSNGSSGMLADGGSMASLTGKASALSLSSDLGPGGSDLQNGVVHPCS
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtacaagccccacaatggaccgaattccttttgtgtccgatctgcacccaaacg
ttcgaggagaccgtccgcaagcccatcagcctgggatgcggccataccgtctgcaagatg
tgcctgaacaagctgcatcggaaagcctgccccttcgaccagaccaccatcaacaccgac
atcgagcagctgcctgtcaactccgctctgctgcagctggttggtggacaggtgcccaag
ctgcagcccctcaccctgctcacgggtgcagaggacaccaagcactatgatgaggcccgc
aagtgcgtggaggagctggctctttacctcaaacctctcggcagcaccagaggtgagcca
cactgcacgggggtgggtctgaacagcgcggcccagagcatgctgagccggcccatgcag
cggaagctggtgacgctggtgcactgtcagctggtggaggaggagggccgcatccgggcc
atgcgggcggcccggtccctgggcgagcggaccgtgaccgagctcatcctgcagcaccag
aacccccagcagctctcctccaacctgtgggccgccgtgcgcgcccgcggctgccagttc
ctgggccctgctatgcaggaagaggccctgaagctggttctgctggctctggaggacgga
tcggcactgtcgcggaaggttctggttctgtttgtggtgcagaggctggagccccgcttc
cctcaggcctccaaaaccagcatcggacacgtggtgcagctgctgtaccgggcctcctgc
ttcaaggtgacgaagcgagacgaggactcgtccctgatgcagctgaaggaggagttccgc
acgtacgaggccctgcggcgggagcacgactcgcagatcgtgcagatcgccatggagggc
ggcctacgcatcgcccctgaccagtggtcctccctgctgtacggggaccagtcccacaag
tcccacatgcagtccatcatcgacaagttacagaccccggcgtcattcgctcagagtgtg
caggagctcaccatcgctctgcagaggactggagacccagccaacctcaacaggctcaga
ccgcacctggagctgctggccaacatcgaccccagtccagacgctccaccccccacctgg
gagcagctggataagggcctggtggcggttaagaccgtggtgcacggcctggtggacttc
atccagaaccacagcaagaagggcagcgaccagcagcaggtcagttatcctccgcagcac
agcaagtacaagacctacatgtgccgggacatgaagcagaagggcggctgccctcgtgga
gccagctgcaccttcgcccactcccaggaggagctcgacaagtaccgcaaagtgaacaag
cggctggcggctcgccggcccctcagccagtcgctgacccagctgaaggaggtggggctg
ccctgctcccccggcatgcagcaggaggacgagagcatggaggtgctgggccgcaagccc
tcctccctgaccaacggcatcgtggcggccgggcccggctcgccgctgacgcagctcatc
tcccgcggcgccgacccggcctacaaccccggctgcaagcccgtcaagatagacgcggtc
agcctgagcgcgcccgggtctccccctgactctttggacaccaaagtgatggccatgaac
ccccatggcttgtcccacccgaggatggagagcctttccatgcacaagcagcttcccgtg
gtccccaggggaccccagatgtacccccaacagcagcctgagatgttctaccaagagtcc
agaccgccagcctctgcgtcgcagtacgagacctcccagtaccccgcgggtaacccctac
ccctaccagtcctcacagtatgtccagcgctacatccgaaacgcgccccctcccagcgag
ccgggcatgcccccgtaccaggacccgtacccgggcccctacgctccggagcgcccctac
cccgcccctcagtcgggccccccgttctccgccatgactcagcacgtgtacccgcctcac
tacgacaaccgccgccactcgccctacgccgggccgccgccccagcccttcgccccgcgc
gacgagccggtcaggatgagccccgtgcccgtcgacgtgcccccgccgcccccgcctccc
gccgcgggctccccctacctgtccgaatcctctcgggacaggtaccccccagaggcctac
taccccgtcggcccccaccacaaccaaatgaggccgtacgccagggacccctcccgctcc
cagcacagtctggattacctccaccgcagacgcaaggagatcatggcccagctggaggag
aggaaggtcatctctccccctcccttcgccccctcgcctacactgccccacactttcccc
accaactacccgcaagagtatatggaagagaaccctcaagcttttgggaagtgtcgagag
ccggactatcctggccagtactccccctggtcatgtgacaccatcggttcctatattggc
accaaggaagtcaagtccaaagacgtcatggccggtggtgccgtagaaatgatgaatgta
gacaacaaaggcttaagggaggcagccgtggacatgcagcgccggccggccgaggccaaa
gatgacgaccccatcatccccttcggcccgctgcccaccgtgtcccgcttcggagccatc
tcccgcacctccaaaaccggctaccaaaccaccgggccggtgcaggccatggcctcctca
cagggatctgccaccaaacacatcactgtagcagctgattacacgtatgggaatcatgga
ggctggggcggagccccgtaccctcagcaccaaaacatgacttctcagggacacttcagc
gagcgtctgcccatcccagcccaggacagagagcagctgaagatggaactccagcaggtc
aaccagcagatcaaccaacagacccaggtccgcagtatggaggctgtcagcagcggcctg
ttgctgcagagggaggcgggctctctggctgcccctccggggccgggcgagtggtcggcc
gggagcgtctccagcgagcagctgagcctggagctgcaccacgtggagcgagagatcggc
aagaggacccgcgagatagccatggagaatcatgtggctcacgatgtgaagtacaagctg
aaggctgccgagaatgggcagcctgaccacaaggtccagcgagacgaccaccccatgacg
ctcagtgagggctcaaacggctctagcgggatgctggcggacggcggcagcatggcgtct
ctgaccggcaaggcgtccgccctcagcctgtcctctgacctggggcccggcggctcagac
ctgcagaacggggtggtccacccctgctcctga
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