Conger conger (European conger): 133126163
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Entry
133126163 CDS
T10633
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ccog Conger conger (European conger)
Pathway
ccog03013
Nucleocytoplasmic transport
ccog03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccog00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
133126163
03015 mRNA surveillance pathway
133126163
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccog03019
]
133126163
Enzymes [BR:
ccog01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
133126163
5.6.2.5 RNA 5'-3' helicase
133126163
Messenger RNA biogenesis [BR:
ccog03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
133126163
mRNA cycle factors
Common to processing body (P body) and stress granule
133126163
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
133126163
NCBI-ProteinID:
XP_061094054
LinkDB
All DBs
Position
4:complement(6515876..6536461)
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AA seq
1102 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTQGQTQSQLDNQVNG
PDGVLQNGGVDDGVPKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDKDYGDEIAIELRSSVGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSV
SGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTG
KTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVS
FLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTC
VGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAK
AGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDF
QWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYE
GQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPR
RLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPR
KLVNTINPGARFMSTAMYDAREALIPGSVYDRSSTGRPSNMYFQTHDQIGMIGAGPSHVA
AMNIPIPFNLVMPPMPPPGYLGQANGPAAGRGALKGKAGRGGRQRNRGMGNHGSGQANMP
NSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALS
QDSTYQGERAYQHGGVTGLSQY
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaagcgtacgggccgagctcacagactctaaccttcctggacaccgaggaa
gcggagttgcttggagccgatacccagggttcggagttcgagttcaccgacttcactctg
cccagccagacgcaaacgcaaggccaaacccagagtcagctcgacaaccaggtgaacggg
cctgatggagttttgcagaacggaggggtcgatgatggtgttccgaaaaccagccagctt
ttggctgagctgaattttgaggaagatgaagaggacacgtattacaccaaagacctccct
gtgcatgcttgcagctactgtggcatccatgatcctgcttgtgttgtgtattgtaacacc
agcaagaagtggttctgcaatggacgtggcaatacctctggcagccacattgtgaaccac
ctggtccgggccaagtgcaaggaggtgaccctgcataaggacgggcccctgggcgagacg
gtcctggagtgctacaactgcggctgtcgcaacgtcttcctgctgggcttcatcccggcc
aaggctgactcggtggtggtgctcctctgcaggcagccgtgtgccagtcagagcagcctg
aaggacatcaactgggacagctcccagtggcagcccctgatccaggaccgctgcttcctc
tcctggctggtgaagatcccgtctgagcaggagcagctccgtgcccggcagatcaccgcc
cagcagatcaacaagctggaggagctctggaaggaaaaccccacggcgaccctggaggac
ctggagaagccgggcgtggatgaggagccccagcacgtgctgctacgctacgaggatgcc
taccagtaccagaacatcttcgggcctctcgttaagctcgaggctgactacgacaaaaag
ctaaaagagtcccagacccaagataatataacggtcaggtgggaccttgggctgaataaa
aagcggattgcttatttcacacttcccaagacggattcaggtgacatgcggctgatgcag
ggggatgagatctgtctgaggtacaaaggagacctggcccctctctggaaggggattggc
cacgtcatcaaggttcctgataaagactatggggacgagatcgccatcgagctgaggagc
agtgtcggggctccagtggaggtgccccacaacttccaggtcgacttcgtctggaaatcc
acctccttcgaccggatgcagagtgccctgaagacgtttgccgtggacgagacgtccgtc
tccgggtacatctaccacaagctgctggggcacgaggtggaggacgtcatcatcaaatgt
cagctgcccaaacgcttcaccgcacaggggctgcccgacctcaaccactcgcaggtgtac
gcggtgaagaccgtgctccagcgtcccctcagcctgatccagggccccccgggaaccggc
aagaccgtcacctcggcaaccatcgtgtaccacctggccaggcagggcaacgggcccgtg
ctggtgtgcgctcccagcaacatcgcggtggaccagctgacggagaagatccaccagacg
gggctgaaggtggtgaggctctgcgctaagagccgggaggccatcgactcgcccgtgtcc
ttcctggccctgcacaaccagatccgcaacatggacagcatgcccgagctgcagaagctg
cagcagctgaaggacgagacgggggagctgtcctccgccgacgagaagcgctatcgggcg
ctgaagcgcacggccgagagagagctgctcatgaacgcggacgtgatctgctgcacctgc
gtgggggcgggtgacccccgcctggcgaagatgcagttccgctccatcctgatcgacgag
agcacgcaggccacggagcccgagtgcatggtgcccgtggtgctgggggccaagcagctc
atcctggtgggggaccactgccagctgggcccggtggtgatgtgcaagaaggcggccaag
gcgggcctgtcccagtccctgttcgagcggctggtggttctgggcatccggcccatccgc
ctgcaggtccagtaccgcatgcacccggcgctcagcgccttcccctccaacatcttctac
gagggctctctgcagaacggagtcactgccgcggaccgcattaagaagggctttgacttc
cagtggccgcagccggacaagcccatgttcttctacgtgacgcagggccaggaggagatc
gccagctcgggaacatcctacctgaacagaacggaggctgccaacgtggagaagatcacc
accaagctgctgaaggccggggccaagccggaccagatcggcatcatcacgccgtacgag
ggccagcgctcctacctggtgcagtacatgcagttcagcggatccctgcacaccaagctg
taccaggaagttgagattgctagcgttgatgcattccaaggcagagagaaggacttcatt
atcctgtcctgtgtccgagccaatgaacatcaggggattggatttctcaacgacccacgg
cgtctcaacgtggctcttacaagggcaaggtacggggtgatcatcgtggggaaccccaag
gccctgtccaagcagccgctgtggaaccacctgctgaactactacaaggagcagaaggtc
ctggtggagggacccctcaacaacctgcgcgagagcctcatgcagttcagcaagccccgc
aagctggtcaacaccatcaaccctggagcgaggtttatgagcaccgccatgtacgatgcc
cgcgaggccctcatccccgggtctgtgtacgaccgcagcagcacgggccgtccgtcgaac
atgtacttccagacccacgaccagatcggcatgatcggggcgggccccagtcacgtggcg
gccatgaacatccccatccccttcaacctggtgatgccccccatgcccccgccggggtac
ctgggccaggccaacggccctgcggcaggccgcggcgctctgaagggcaaggcgggccgg
ggcgggaggcagaggaaccggggcatgggtaaccatggcagcgggcaggccaacatgccc
aacagccaggccagccaggacgtggtctcccagcccttctcccagggaccgctgacccag
ggctacatctccatgagtcagccttcccagatgagtcagcccggcctgtcccagcccgaa
ctctcccaagacagctatctgggcgatgagttcaagtcccagattgatgtggccctgtcc
caggactctacctaccagggcgaacgtgcataccaacatggtggggtgactggactgtca
cagtactag
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