Conger conger (European conger): 133128450
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Entry
133128450 CDS
T10633
Name
(RefSeq) LOW QUALITY PROTEIN: regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ccog Conger conger (European conger)
Pathway
ccog03013
Nucleocytoplasmic transport
ccog03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccog00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
133128450
03015 mRNA surveillance pathway
133128450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccog03019
]
133128450
Enzymes [BR:
ccog01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
133128450
5.6.2.5 RNA 5'-3' helicase
133128450
Messenger RNA biogenesis [BR:
ccog03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
133128450
mRNA cycle factors
Common to processing body (P body) and stress granule
133128450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
SRP54
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
133128450
NCBI-ProteinID:
XP_061097960
LinkDB
All DBs
Position
5:66466339..66492127
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AA seq
1095 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYEFTDFTLPSQTQTQGHTQSQLDNQVIV
SDGLLQNGGLDEAVSKSSQLLAELNFEEDEEDTYYTKALPVHACSYCGIQDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVALHKDGPLGETVLECYNCGCRNAFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKENPGATLEDLEKPGVDEEPQRVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFSLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDNYGDEIAIELRSSVGAPVEVPHSFQVDFVWKSTSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSF
LALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICGTCV
GAGDPRLAKMQFRSILIDESTQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKAAKA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIRKGFDFQ
WPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGVITPYEG
QRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRR
LNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRK
LVNTINPGARFMSTAMYDAREALIPGSVYDRSTTVRPANMYFQTHDQIGMIGAGPNPLAA
LNIPIPFNLVMPPLPPPGYLGQSNGPVAGRGAMKGKMGRGGRQRGRGLGHHGDGQGAVPS
SQASQDMQSGPLTQGFISISQPSQMSQPGLSQPELSQDSYLGDEFKSQMDVALSQDSTYQ
GERAYQHGVTGLSQY
NT seq
3288 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggccaagctcacagactctcaccttcctagacaccgaggaa
gcggagctgctcggagccgatacccagggctcggagtacgagttcaccgactttactctg
cccagccagacccaaacgcagggccatacgcagagtcagttggacaaccaggtgatcgtc
tccgacgggctcctacagaatggcggtcttgacgaggcggtctcgaagagcagtcagctt
ctggccgagttgaacttcgaggaagatgaggaggacacgtattacaccaaggctctgccc
gtgcacgcctgcagctactgtgggatccaggaccctgcttgcgtggtgtactgtaacacc
agtaagaaatggttctgtaatggccgtggaaacacctctggcagccacatagtgaaccac
ctggtccgggccaagtgtaaggaggtggccctgcacaaggacgggcccctgggcgagacg
gtcctggagtgctacaactgcggctgccgcaacgccttcctgctgggcttcatcccggcc
aaggccgactcggtggtggtgctgctgtgcaggcagccgtgtgccagtcagagcagtctg
aaggacatcaactgggacagctcccagtggcagcccctgatccaggaccgctgcttcctc
tcctggctggtgaagatcccgtcggagcaggagcagctccgtgcccggcagatcaccgcc
cagcagatcaacaagctggaggagctctggaaggagaacccgggcgcgacgctggaggac
ctggagaagccgggcgtggacgaggagccccagcgggttctgctgcgttacgaggacgcg
taccagtaccagaacatcttcggcccgctcgtcaagctggaggccgactacgacaagaag
ctcaaagagtcccagacccaggacaatatcacagtccgctgggacctgggcctgaataag
aagcgcatcgcttatttctcactgcccaagacggactcaggtgacatgcggctgatgcag
ggcgatgagatctgcctgaggtataaaggagacctggctcctctgtggaagggcatcggc
cacgtcatcaaagtgcctgacaactacggcgatgagattgccatagagctgcgcagcagt
gtgggcgctccagtggaggtgccgcacagcttccaggtggatttcgtgtggaagtccacc
tcctttgacaggatgcagagtgcgctgaagacctttgcagtggatgagacctcggtctct
gggtacatctaccacaagctgctggggcacgaggtggaggacgtggtcatcaagtgccaa
ctgcccaaacgcttcaccgcccagggcctgccagacctcaaccactcccaggtttacgct
gtgaagacggtgcttcagagacccctcagtctcatccagggacccccaggaacagggaag
accgtcacctcggcaaccatcgtttaccacctggcccgccagggaaacgggcctgtgctg
gtgtgcgctcccagcaacatcgcggtggaccagctgacggagaagatccaccagacgggg
ctgaaggtggtgcggctctgcgctaagagccgggaggccatcgactcgcccgtgtccttc
ctggcgctgcacaaccagatccgcaacatggacagcatgcctgagctgcagaagctgcag
cagctgaaggacgagacgggcgagctgtcctccgctgacgagaagcgctatcgagcgctg
aagcgtacggccgagagggagctgctcatgaacgcggacgtgatctgcgggacgtgtgtg
ggggcgggggacccccgcctggcgaagatgcagttccgctccatcctgatcgacgagagc
acccaggccacggagccggagtgcatggtgcccgtcatcctgggagccaaacagctcatc
ctggtgggggatcactgccagctgggcccggtggtgatgtgtaagaaggcggccaaggcg
gggctgtcccagtccctgttcgagcggctggtggttctgggcatccggcccatccgcctg
caggtccagtaccgcatgcacccggcgctcagcgccttcccctccaacatcttctacgag
ggctctctgcagaacggggtgaccgccgcggaccgcatcaggaagggctttgacttccag
tggccgcagccggacaagcccatgttcttctacgtgacgcagggccaggaggagatcgcc
agctcagggacgtcctacctgaacaggaccgaggcggcgaacgtggagaagatcaccacc
cggctgctgaaggccggggccaagccggaccagatcggcgtcatcacgccgtacgagggc
cagcgctcctacctggtgcagtacatgcagttcagcggctccctgcacaccaagctgtac
caggaagtggagatcgccagtgtggatgctttccagggccgagagaaggatttcatcatc
ctgtcctgcgtccgagccaacgagcaccagggcatcggattcctgaacgacccccgacgc
ctgaacgtggccctcaccagggcccggtacggggtgatcatcgtggggaaccccaaggcc
ctgtccaagcagccgctgtggaaccacctgctgaactactacaaggagcagaaggtcctg
gtggagggacccctcaacaacctgcgcgagagcctcatgcagttcagcaagccccgcaag
ctggtcaacaccatcaaccccggtgcgcgcttcatgagcactgccatgtatgatgccaga
gaggccctgatccccggctctgtgtacgaccgcagcaccacggtgcgcccggcgaacatg
tacttccagacgcacgaccagatcggcatgatcggggcggggcccaaccccctggcggcc
ctgaacatccccatccccttcaacctggtgatgccccccctgcccccgcccgggtacctg
ggccagagcaacggccctgtcgcagggcgcggcgctatgaaggggaagatgggccgcggc
gggcggcagaggggccgcgggttgggtcaccacggcgacgggcagggcgccgtgcccagc
agccaggccagccaggacatgcagtccggccccctgacccagggcttcatctccatcagc
cagccgtcccagatgagccagccgggcctctcccagccagagctgtcccaggacagctat
ctgggcgacgagttcaagtcccagatggacgtggctttgtcccaggactccacgtaccag
ggcgagcgtgcgtaccaacacggagtgacgggactgtcgcagtactag
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integrated database retrieval system
