Conger conger (European conger): 133128554
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Entry
133128554 CDS
T10633
Symbol
smg7
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
ccog Conger conger (European conger)
Pathway
ccog03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccog00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133128554 (smg7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccog03019
]
133128554 (smg7)
Messenger RNA biogenesis [BR:
ccog03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
133128554 (smg7)
mRNA cycle factors
Common to processing body (P body) and stress granule
133128554 (smg7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
zf-AD
Motif
Other DBs
NCBI-GeneID:
133128554
NCBI-ProteinID:
XP_061098162
LinkDB
All DBs
Position
5:45622738..45647599
Genome browser
AA seq
1170 aa
AA seq
DB search
MNLCAQYLRQAEALKADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLW
NHAFKNQITTLQSQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRV
KSSQLGIISNKLNSSSSIVKPQPSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQL
VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALEGRDEVK
TKWSVSDFIKAFIKFHGHVYLSKSLEKLNSLREKLEEQFQKLILQKAFSSQQLVHITVIN
LFELHHLRDFSSESDDQSFSPEEQISWIQQLGLFMSFLGVMCSRALLNRNRAEILGECPL
PAIKVSLEWLRLRPTVFTESAVDKRQYIWPWLVSILNSFQPREEDVSCTAVNPLPEEFEL
QGFLALRPALRTLDFSQGHQGIAVDKEGLPVRARHQRLISLGKWVADNQPGLIQCRIEDG
LLLFITEIPELAVEEPQERDGPVLQESSNGEQTAHEGSPGLKSVLSAGKNQNSGPESAER
PVVTFKENIKPREPSRNHHPKESGKERRDFGKGNGAPSRSEQKKDKKKNEAKKSCHEKTT
DTGKQVKAQSEMRKTPVSEARKTPVSQTQTTSSSQFIPIHHPGAFPPLPSRPGFPPPAYV
IPPPVAFSVSPGFTFSAGVSVPGPFLQTPSHPQSGAQVQAGKPSHIPYSQQRPSGPGALN
QQQQQQPQPPQQAAQPTAQQSAQLQIQALSQQQQSPTKPVPAQLGKSPPHHPGMQQYMQV
PEQSAQLWNQHQTAASGVQKMPMQMPVKQPFFMPPQDPLKLFEHPHSQVPLQAPPTANMD
KKMKFPEVKVQDFYWDPPYRMTDSRSMMGHQMASERLVKRQPGVFCPGQDSSQRGPSYED
NKSTPLLPPALLKSLADFEEEEELAFAKPHDFYQALASPLSSAPGPNMFLPNQSRLERAT
EQTSSLLPLSGFPLQENYQNNSIFSEAYGKNMSPNPKPDVPLAHQEHSLYSLFEGTPWSP
SLPASSDHSTPASQSPHSSNPSSLPSSPPTHNHSSIPFPSFGPIGTPDSRERRIADRWKV
EKNAAMCGFGLDYLPAASSATETSWHQGSNPSNTWAAQESPMEDSSTVLLDSLKSIWSSS
MMQSGPSALEQLLMQQQKQQRGHGPMNPPH
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgaacctctgcgcccaatatttaaggcaggcagaggccctgaaggcggatatgaccgat
tcaaagctgggtccggcagaggtgtggacatccaggcaggcactgcaggacctgtaccag
aagatgctggtgacagacctggagtacgccctggacaagaaagtggaacaagacctctgg
aaccatgcttttaagaaccagataaccacattacagagtcaggccaagaaccgagccaac
cccaacagaagtgaggtgcaggccaatctgtccctttttcttgaggcagctagtggcttc
tatacccaattattgcaggagctgtgcacagtgtttaacgtggacttgccctgccgagta
aaatcctctcagctcgggataatcagcaataaactgaacagcagcagctccatcgtgaaa
ccacagcctagctcctgctcctacatctgccagcactgtcttgttcacctgggggacatt
gcacgctaccgcaaccaaaccagccaggcagagtcctactaccgacatgctgctcaactt
gtaccatctaatggtcaaccttacaatcagctggccatcttggcctcttcaaaaggggac
cacctcaccaccatcttctactactgcaggagcattgctgtcaagttcccctttccggca
gcttctaccaacttgcagaaagcactctctaaagctctagagggtcgtgacgaggtcaaa
acaaagtggagcgtgtcagatttcattaaggccttcatcaagttccatggccatgtctac
ttgagcaagagcctggagaaactcaacagcctgagagagaagctggaggagcagtttcag
aagctgattcttcagaaggcattcagctcccagcagctggtgcacatcacggtgatcaac
ctgtttgagctccatcacctgagagacttcagcagtgagtctgacgatcagagcttcagc
cctgaggagcagatcagctggatccagcagcttggattgttcatgtctttcctgggcgtg
atgtgcagccgcgcgttgctcaacaggaaccgcgcagagattctgggagagtgtcccctt
cccgccatcaaggtgtccctggagtggctccgtcttcgaccaaccgtcttcaccgagagc
gctgtggacaagagacagtacatttggccctggctggtctccattctgaacagtttccag
cccagggaggaggatgtgtcctgcacagcagtgaatcccctcccagaagagtttgagctc
caaggctttctggctctcagaccagctctacggacgctggacttttcccaaggccaccag
ggcatcgctgtggataaggaagggctcccagtgcgagcccgtcaccagaggctcattagc
ctggggaaatgggtggcagacaaccagcctgggctgatccagtgccgtattgaggacggg
ctgctgctgttcataacggagatcccagagctggccgtggaggagccccaggagcgggac
gggcccgtactgcaggagtcctctaacggcgagcagacggcccacgagggcagccccggc
ctgaagtccgtcctgtccgccgggaagaaccagaacagtgggccggagagcgccgagcgt
cccgtggtcaccttcaaggagaacatcaaaccgcgcgagcccagccggaaccaccacccc
aaggagagcggcaaggagaggagggacttcggaaaaggcaacggtgcccccagccggagc
gaacagaagaaggacaagaagaagaatgaagcaaagaagagctgccatgagaagaccaca
gacaccggcaaacaggtgaaggcacagtctgaaatgaggaagactccagtgtccgaggcg
aggaagacaccagtctctcagacacagaccaccagctcctcccagttcatcccaatccat
caccctggagccttcccccccctgcccagtcggcccggattcccgcccccagcgtatgtg
atcccgccccctgtggcgttctcggtgagccctggcttcacgttctcggcaggcgtgtca
gtacccggccctttcctgcagacgccgtcccacccgcagagcggtgcccaggtgcaggct
gggaaaccgtcgcacattccctacagccagcagcggccctcggggcccggggccctaaac
cagcagcagcagcagcagccgcagccacctcagcaggctgcgcagccaactgcacaacag
tctgcgcagctgcagattcaggccctgtcgcagcagcagcagtcacccaccaagcctgtg
ccggcgcaactgggcaagagtccacctcaccacccaggcatgcagcagtacatgcaggtg
ccggagcagtctgcacagctgtggaaccagcaccagaccgcagcctcgggcgtgcagaag
atgccaatgcagatgccagtcaagcagccgttcttcatgccgccccaggacccgctgaag
ctgttcgagcacccccactcccaagtgccactgcaggcaccgcccaccgccaacatggac
aagaagatgaagttccccgaggtcaaagttcaggacttctactgggacccgccctaccgt
atgacggacagccggtccatgatgggccaccagatggccagcgagaggctggtgaagagg
cagcctggagtcttctgccccggccaggacagcagccagaggggaccgtcctatgaggac
aacaagagcacccctctcctgcctcccgccttgttaaaaagtctagcagactttgaggag
gaggaagagctggcctttgctaagcctcatgatttctaccaggccttggccagccctctt
agctctgctcctggaccaaacatgtttttgccaaaccagtcaagactggaaagagccact
gagcagacatcctctctcctgccactgtctggatttccccttcaggagaactatcaaaac
aacagcatttttagcgaagcctacggcaaaaatatgagccctaaccccaagcctgacgtt
cctctggcacaccaagagcattccctctactctctgtttgaaggaactccgtggtcccct
tctcttccggccagctcagaccactccacgccagccagccagtcccctcattcctctaac
cccagcagtctgccctcgtctccacccacacacaaccacagctccatccccttcccctct
ttcggccccatcggcacccctgacagtcgcgagcgccgcatagctgaccgctggaaagtg
gagaagaatgcggcgatgtgcgggtttgggttggactacttgcctgctgcctcctcagcc
acagagacgagctggcatcaaggcagcaatcccagcaacacgtgggctgcacaggaatcg
cccatggaggactcttccaccgtcctcctggacagcctgaagtcgatctggtccagctcc
atgatgcagtcgggcccgtcggcactggagcagctcctgatgcagcagcagaagcagcag
aggggtcacggccccatgaacccgccgcactga
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