Conger conger (European conger): 133132297
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Entry
133132297 CDS
T10633
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ccog Conger conger (European conger)
Pathway
ccog03015
mRNA surveillance pathway
Brite
Transcription machinery [BR:
ccog03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
133132297 (pcf11)
Messenger RNA biogenesis [BR:
ccog03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
133132297 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
133132297
NCBI-ProteinID:
XP_061103623
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All DBs
Position
7:complement(46290757..46306577)
Genome browser
AA seq
1697 aa
AA seq
DB search
MSDDAAREDACREYLSSLEDLTFNSKPHINMLTILAEENLHFAKDIVAIIEAQIAKAPAA
EKLPVLYLVDSIVKNVGGEYLEVFAKNLVTSFICVFEKVDENTRKSLFKLRSTWDDIFPL
KKLYALDVRVNSVDPAWPIKPLPPNVNASIHVNPKFLKQTEEVTTPRAKTPQPPVHTVVS
EKNLTQEQVIRQQLLAKQKQLLELQQKKIELELEQTKAQLAANQLVSVTNPSNIPASQPS
IGVRVSLLTTAQPVKPWLPPPPDPKVSTRDPRLNRLSPAAAYVKEQVPNKKDSHGFGTAA
HPSDKKTNASAEKQSKLEKTKIPKKDFLTEEKPKSKSPSPLTKGVQGKTKIPELENVKAT
DVNKRDPRLRKHLHDKTDVKEEELKEKKRGSDKKDRDEPTKALEHRSLGTRSKLANGSVN
KHEPQEKQDSKPTKGNTRKRSHSRSRSPVLHSPKRKDRRSPKRRTRSISSSPPKSGKGRQ
AGDKHTHPEEFPPHANTREERSTPKKSASEPRRAKRSLEERPVEARESHSPRLPSDTKEN
TKRWRSGWEENKHLKQPEEGLPHGKSAQRHKASWSSSQRVTTPRTPKPHRLSIDVNLQIP
EVLNSASKRDLLKKANKRLADGEISHDEFLAVAHRIKQLFLYQEEMQRSDSWEGSDDGQI
VRKKKPLLATPPSQQGSLSDAEISYYEHKAKLRRTQVQRQGNDVWDADDSFSNEEASVRE
IEFPEGHPGTRTGDSHFRKHDEATEVPMCTSPIKSNRPEGPKCSQENKVMFEEHATVDVI
KDLPSNKRGILRLKGQPGQDYRKRGDPRDYSDDRLKVKLEGGRDTHSPYNERPQLQRPPY
EETDQGKSSLEAQKRYGGGNEAMKLEDSVNQPCSRLDELRKNDRPSNSSLLYKNSPSPVS
FDGLAGKSPVRAFDSSSSLEVDSLPMTVREPSPSERFDIPSSCEQPMTVSEGDVPVSVEV
PPRHDIPSGPGRSGQPGQMLCEASGQTPPHSSEGSLSLSGLSRYDAAKHPQRFDGPQGPQ
SMVFDGPSHMGQPRMEGPSRPHVQGRFDVNPGPGRFDGHSGPHNASRFDGQPPQGQSRFD
GPQGPVRFNGPHLHKGQERFDDSIRYDSPSMQTGPPRFSEPHSLGRFDGPHIQQGTGRFD
GPVVQQQPSGRFDNQGQFDGLQMQPNMFERPMRYDNPHIPQGLARFEPPVRFGGPQGQGP
VRYDGPQSGPGAIRFENPQGQLGPMIFDGQQGMARFDCPPGQQPPPRYCGLPNQLRPQGL
PMFETPQGPGPLANPGSQQPANFNMPNNRFSEPLNVFSSGPQPFPGQNISQGANFCVRAV
PGGSAFSNTHVRPVGSFYNPSAPVVSGGSVNPSLPVGNIPQPMNMLSGIGKPQLPAPFIQ
SFIQTQNPVPFNQAGPQFSSESHFGQVDVNDLLAKLIDTGIIKPTQTDAPPNESPAPNPI
QPTAEEEEEEEQEDDHDVPDLTGFVIDDMKQRYESVITKLYTGIQCYSCGMRFTASQTDV
YADHLDWHYRQNRSEKDISKKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVV
QKTQEAAKEKEFQSVKAAPAVVDESCEICQEQFEMYWEEDEEEWHLKNAIRVEEKTYHPS
CYEDYKNTSSFVDCTPSPSKAPVENPLNVFIKQEQDDQSTCSSVKQETDAQSGSAEENVE
EKVQVKLEAEEVGAIIC
NT seq
5094 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgacgcggcgagggaagatgcttgcagagagtatctgtcgtccctggaagat
ttgactttcaacagcaaacctcacatcaacatgctgaccattcttgcggaggagaacctg
cacttcgccaaggatatcgtcgcaataattgaagcacaaatcgccaaggcacctgcagca
gagaagcttccagttttgtacttagtggattccatagtgaagaatgttgggggcgaatat
cttgaagttttcgctaaaaacctagtcacttcgtttatttgtgtttttgaaaaggttgat
gagaacactagaaaaagtctgttcaaattgcgctccacctgggacgatattttcccgttg
aagaaactttatgcattagatgtcagagtgaattcagtagatcctgcatggcccataaaa
ccacttccaccaaatgtgaatgccagcatccatgtcaaccccaaatttttaaaacagact
gaggaagtaaccactccaagagccaaaaccccacagcctccggtccacacagtggtgagt
gagaagaatttgacccaggagcaagtaataaggcagcagttgcttgcaaagcaaaagcaa
ttgcttgagctacagcagaagaagatagagctagaacttgaacaaacaaaagcccaactg
gctgctaatcagttggtatcagtaaccaatccatccaatattcctgcaagccagcctagt
attggggtgagagtcagtctactgaccactgcacaacctgttaaaccctggcttccacca
ccacctgacccaaaggtttccacaagagacccccgcttgaacagactaagtccagcagct
gcctatgtgaaggagcaagtgccaaataaaaaggacagtcatgggtttgggactgccgca
catccctctgataagaaaacaaatgcatcagctgaaaagcaaagtaaactagaaaagaca
aaaatccctaaaaaagattttttgactgaagaaaagccaaaatcaaaatctccttcccct
ttgactaaaggggttcaaggaaaaactaagatccctgaacttgaaaatgttaaggccaca
gatgtcaacaaaagggacccaaggttacggaaacacctccatgataagaccgatgtgaaa
gaggaagaacttaaagaaaagaaaaggggttctgacaaaaaagatagggatgaacccacc
aaagccttggagcacagatcattgggcaccagaagcaagcttgcgaatggttcagttaac
aagcatgagcctcaggagaaacaagactccaaaccaactaaaggcaacaccaggaagcga
tctcactcaaggtctcgttcacccgtgctgcactctccaaaaaggaaagaccgacggtct
ccaaagaggagaaccagaagcatttcttcgtctccaccaaagtctgggaagggaaggcaa
gccggagacaaacacacacacccagaagaatttccgccgcatgcgaacactagggaagaa
agaagcactcccaaaaagagcgcaagtgaacctaggagggccaaacggtcattagaagaa
cgacctgttgaagcaagagaatcccattccccgagattaccttccgatacgaaagaaaat
accaagaggtggcgaagtggttgggaggaaaacaaacacctgaaacagcctgaagagggc
cttccacatggaaaatcagcacaaagacacaaagcatcttggtcaagcagtcagagagtt
accacacctcgcacaccaaaaccgcatcgcctcagcatcgatgtcaacctgcaaatacca
gaagtgcttaactctgcaagtaaacgcgaccttctgaaaaaggctaacaaaagacttgct
gatggtgaaatatcccatgatgaattccttgctgtggcccatcggatcaaacagcttttt
ctgtaccaagaggaaatgcaaagatctgactcttgggagggaagtgatgatggacagatt
gtacggaaaaagaagcccttgctggccacacccccgtcccagcaggggagtctgtctgat
gctgaaatctcttactacgagcataaagctaagttaagaagaacccaggtccagcgtcaa
ggtaatgatgtttgggatgcagacgacagcttctcgaacgaggaggcgagtgtgagagaa
attgagttccccgaaggacaccccggaacaaggactggggatagccactttagaaaacat
gatgaggctactgaagtacccatgtgtacttcccctataaagagtaacaggccagaagga
cctaagtgctctcaagaaaataaagtcatgtttgaagagcatgctactgtagatgttatt
aaagatttgcctagtaataaaaggggaattctcaggctaaagggacagcctggacaggat
tacaggaagagaggtgatcctcgtgactatagtgatgacagactaaaggttaagttggaa
ggtggaagagatactcactcaccatacaatgagagaccgcagcttcagaggccaccgtat
gaggaaactgatcaaggaaaaagtagcttggaagcacagaagagatatggaggaggaaat
gaagccatgaagcttgaagattctgtaaaccagccgtgctcaaggctcgatgagcttaga
aaaaatgatagaccttcaaattctagtctgttgtacaaaaactccccaagtccggtcagt
tttgatggacttgctggaaaatcacctgtgagggcctttgacagttcatccagcttagaa
gttgacagcctcccaatgactgtacgggaacccagccccagtgagagatttgacattccc
tccagctgtgagcagcccatgaccgtatctgagggtgatgttccagttagtgtggaagta
cctcctagacatgatattccatcaggaccaggaagaagtggacaaccaggtcaaatgcta
tgtgaagcttcaggacagacaccgcctcattcttcagaaggcagcctttcgctgtctggt
ttatcacgatatgatgccgcaaaacaccctcagaggtttgatggaccacaaggtccacag
tccatggtttttgatggcccaagtcacatgggccagccaaggatggagggaccatcaaga
cctcatgtacaaggcaggtttgatgtgaatcctggaccaggacgttttgatgggcactct
gggcctcataacgcttcaagatttgatggtcaacctccgcagggccaaagtagatttgat
ggtcctcaagggcctgtaagattcaatggcccacatttacataagggtcaagagaggttt
gatgattctattagatatgacagtccatctatgcaaactggtcctccaagattcagtgaa
ccgcacagtcttggaagatttgatggaccacatattcaacaaggaacaggccgatttgat
gggccagttgtgcagcagcaaccttcaggcaggtttgacaaccaaggtcaatttgatggg
ttacagatgcaacctaatatgtttgaaaggccaatgagatatgataatccccatattcca
caaggccttgcgaggtttgaaccgccagtgcgatttggtggcccccaaggacaagggcca
gttcgatatgatgggcctcaatctgggccaggtgctatacgatttgaaaaccctcaagga
caacttggacctatgatatttgatgggcagcaaggtatggctcgatttgactgcccacct
ggacaacaaccaccacccagatactgtgggttaccaaaccagctgcgaccacaaggcttg
cctatgtttgagacaccccagggtccggggccactggctaatcctggcagccaacaacca
gcaaatttcaacatgccaaataacaggttttctgagccattaaatgtgttcagcagtggg
ccacagccttttccaggacaaaatatctctcaaggagccaatttctgtgtccgggcagtt
cctggaggttcagccttctccaatacacatgtcaggcctgttggatctttttacaacccc
tctgctccggttgtctctggtggaagtgtgaatccttcacttccggtgggaaatattcct
cagcctatgaatatgctctctggtattggaaaaccccagctgccagcccctttcatccag
tccttcatacaaacacagaaccctgtgcctttcaaccaagcaggtccacagttttcatct
gaaagtcattttggccaggttgatgtcaacgacctattagcaaagctgatcgatacaggg
ataataaagccaactcagacagacgcacctccaaatgagtcacccgcacccaatccaata
cagccaacagctgaagaggaggaggaagaggaacaggaggatgatcatgatgtccctgat
ctcactggctttgttattgacgacatgaaacagagatatgaaagtgttatcactaagctg
tacactggaatacagtgttactcttgtgggatgcgtttcactgcatcgcaaacggatgta
tatgctgatcacttggattggcattatagacaaaacagatcagaaaaggacatcagcaag
aaggtcacacacagaagatggtactacagccttacggactggattgaatttgaggaaatc
gctgaccttgaggagagggcaaagagtcagttttttgagaaagtccatgaggaggtggtg
cagaaaactcaggaagctgcgaaagagaaagaattccaaagtgtcaaagcggctcccgct
gttgttgatgagtcatgtgagatctgccaggagcagtttgagatgtactgggaggaggat
gaggaagagtggcacctgaaaaatgcaatccgcgttgaagagaagacatatcacccatcg
tgttacgaggactacaaaaatacgtcttcatttgtggactgcactccatcccccagcaaa
gctcctgtggaaaaccctttaaatgtgtttattaaacaagagcaagacgaccagtccacc
tgttccagtgttaaacaagagactgatgcacagagcggctctgccgaagaaaatgtggaa
gagaaagttcaggttaagttggaggctgaagaagtcggtgcaattatttgttga
DBGET
integrated database retrieval system
