Conger conger (European conger): 133134672
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Entry
133134672 CDS
T10633
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
ccog Conger conger (European conger)
Pathway
ccog03013
Nucleocytoplasmic transport
ccog03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccog00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
133134672 (upf2)
03015 mRNA surveillance pathway
133134672 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccog03019
]
133134672 (upf2)
Messenger RNA biogenesis [BR:
ccog03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
133134672 (upf2)
mRNA cycle factors
P-body specific factors
133134672 (upf2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
133134672
NCBI-ProteinID:
XP_061106925
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Position
8:43246843..43272671
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AA seq
1287 aa
AA seq
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MPAERNKSVNMDEKDASSFLNKEKDKDREGDRRPASSRDKSKDETKASAKKDNGKAAEEK
RRRLEEDKRKKEEKDRKKKEDERLKAEEEHKQKEEEERKQKEEEEKKRIQEEEEKRQREE
EANLLKEKEEGQQLHQEAWERHQSRKELRSRNQNAQEGRPEEAFFSRLDSSLKKNTAFVK
KLRTLTEQQRDALSNDFASLNLSKYIGEAVGSVVEAKLKISDVGCAVHLCSLFHQRYAEF
APLLLQAWRRHFEARKEEKTPNVSKLRTDLRFIAELTVVGLFTDREGLSLIYEQLKAIIG
VDRETHTHVSVVISFCKHCGDDVAGLVPRRVRGAAEKFGLAFPPSEIISVEKQQPFQNLL
REYFTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQKLLANTQSL
ADLLDENMPDLPQDKTVQEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENMVDLKA
FVPAILFKDNEKGLQGREREESKEPKEVKEVKEVKEVVSTEDLELELETLDIADDTLEVE
VTDEVEGEELAKKLLDEQEQEDEEASTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMDFCM
NMNTKANRRKLVRALFTVPRQRLDLLPFYSRLVATLHPCMSDVAEDLCSMLKGDFRFHIR
KKDQINIETKNKTVRFIGELAKFKMFSKTDTLHCLKMLLSDFSHHHIEMACTLLETCGRF
LFRSPDSHLRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPVEKTVRKKRPPLQE
YIRKLLYKDLSKVTTEKVLRQMRKLPWQDSEAKNYLICCMVNIWNVKYNSIHCVANLLAG
LVAYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTL
FSFISFGVSPDGAPSPLDPPEHLFRIRMVCTLLDTCGQYFDRGSSKRKLDCFLIYFQRYI
WWKKSVEVWTQDHPFPIDIDYMISDTLELLRPKMRLCCSLEEATRQVSELEREFLLKLGL
AMEKDGKCSSSISEGEALDEEDDDDDEEGGAETEEQSGNESEMNDHEEEEGSENEEEERE
EEEEENTDYLTDSNKENETDEENNEVTIKGGGLKHVACAEDEDFIQALDKMMLENLQQRS
GESVKVHQLDVAIPLQLKSQLKKGPPPACSAQAEAEIAETMQFVMLTRKGNKQQFKILNV
PLSSHLAANHFNQQQAEQEERMRMKKLTLDINERQEQEDYQEMMQSLAQRPAPANTNRER
RPRYQHPKGAPNADLIFKTGGRYYTYK
NT seq
3864 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcggaacgcaacaagtcggtcaacatggacgaaaaagatgcgagttcgttttta
aacaaggagaaagacaaggaccgagagggagacaggcggcctgcctcttcccgggacaag
tcaaaggatgagacaaaggcgagtgcaaagaaagacaacggcaaagctgcggaagagaaa
aggaggcgtttggaagaggacaagagaaagaaggaagagaaagaccgtaagaaaaaggag
gatgagaggttgaaagcagaggaggagcataagcagaaggaagaggaggagaggaaacag
aaagaggaagaggagaagaaaaggatacaggaggaagaagagaagaggcagcgtgaagaa
gaagcaaacctactcaaggagaaggaggaggggcagcagctccaccaggaggcgtgggag
cgtcaccagtctcgcaaggagctgcgcagccggaaccagaacgcccaggagggccggccg
gaggaggccttcttcagccggctggactccagcctgaagaagaacacggccttcgtgaag
aagctgcgcacgctgacggagcagcagcgggacgcgctctccaacgacttcgcctcgctc
aacctcagcaagtacatcggcgaggcggtgggctccgtggtggaggccaagctgaagatc
tctgacgtgggctgcgccgtgcacctgtgctccctcttccaccagcgctacgccgagttc
gctccgctcctcctgcaggcctggaggaggcacttcgaggcgcgcaaggaggagaagacg
cccaacgtgagcaagctgcgcacggacctgcgcttcatcgccgagctgacggtggtgggc
ctgttcaccgaccgcgaggggctctcgctcatctacgagcagctgaaggccatcatcggc
gtggaccgcgagacgcacacgcacgtctccgtggtgatcagcttctgtaagcactgcggg
gacgacgtggccgggctggtgccccgccgtgtcaggggggcggccgagaagttcggcctg
gccttcccgcccagcgagatcatcagcgtcgagaagcagcagcccttccagaatcttctc
agggagtacttcacctccctcaccaagcacctgaagaaggaccaccgcgagctgcagaac
atcgagaggcagaacaggcgcatcctgcattccaaaggggaactgagcgaagaccggcac
aagcagtatgaggagtttgccacgtcgtaccagaagctcctggccaatacgcagtccctg
gccgacctgctggacgagaacatgccagacctgccccaggacaagaccgtgcaggaagag
cacggcccgggcatcgacatcttcacccctggcaagccgggagagtacgacctggagggg
gggatctgggaggacgaggacgcccggaacttctacgagaacatggtggacctgaaggcg
ttcgtccccgccatcctgttcaaggacaacgagaagggactgcagggccgggagagggag
gagagcaaagagcccaaggaggtgaaggaggtaaaggaggtgaaggaggtggtgagcacg
gaggacctggagctggagctggagactctggacatcgccgacgacaccttggaggtggag
gtcacggacgaggtcgagggggaggagctcgccaagaagctgctggacgagcaagaacaa
gaggacgaggaggccagcaccggatctcatctgaagctcatcgtcgatgccttcatccag
cagctgcccaactgcgtcaacagggaccttatcgacaaggctgccatggatttctgcatg
aatatgaacaccaaggctaacaggaggaagctagtccgggccctcttcactgtaccacga
caacggctggacctcctcccgttctactcccgcctggtggccaccctgcacccctgcatg
tcggatgtggccgaggacctgtgctccatgctgaagggggacttcaggttccatatcagg
aagaaggatcaaatcaacattgaaacgaagaacaaaactgtgcgtttcattggggagctc
gccaagttcaagatgttctccaaaacggacactcttcattgcctaaagatgctgctgtca
gacttctctcaccaccacattgagatggcctgcactctgctggagacctgcggcaggttc
ctcttcaggtccccggactcgcacctgcgcaccagcgtgctactggagcaaatgatgcgt
aagaaacaggccatgcacctggacgctcgctacgtgaccatggtggagaacgcgtactac
tactgcaacccgccgcccgtggagaagacggtgaggaagaagagaccaccgctgcaggaa
tacatccggaagcttctgtacaaggacctgtccaaggtcaccaccgagaaggtactgagg
cagatgcggaaactgccctggcaggactctgaggcgaagaactacctcatctgctgcatg
gtcaacatctggaacgtcaagtacaacagcatccactgcgtggccaacctgctggcgggg
ctggtggcctaccaggaggacgtgggcatccacgtggtggatggggtcctggaggacatc
cggctgggcatggaggtgaaccagcccaagttcaaccagcggcgaatcagcagcgccaag
ttcctgggggagctgtacaactaccgcatggtggagtcggcggtcatcttccgcaccctc
ttctccttcatctcgttcggggtgagccccgacggagcccccagccccctggaccccccc
gagcacctgttccgcatccgcatggtctgcaccctgctggacacctgcgggcagtacttc
gaccgtggctccagcaagaggaagctcgactgcttcctcatctacttccagcggtatatc
tggtggaagaagagcgtggaggtgtggacgcaggaccacccgttccccatcgacatcgac
tacatgatcagcgacaccctggagctgctgcggcccaagatgaggctgtgctgctccctg
gaggaggccacgcgccaggtctccgagctggagagggagttcctgctcaaactgggccta
gccatggaaaaggacgggaagtgctccagcagcatcagcgaaggggaggccctggacgag
gaggatgacgatgatgatgaagagggcggggcggagaccgaggaacagtccgggaacgag
agcgagatgaatgaccacgaagaggaggaggggtccgaaaacgaggaggaagagcgagag
gaggaggaggaagagaacacggactacctgaccgactccaacaaagagaacgaaacggac
gaggagaacaacgaggtgaccataaagggcgggggtctgaagcacgtggcctgtgctgag
gacgaggacttcattcaggccctggacaagatgatgctggagaaccttcagcagcggagc
ggggagtctgtgaaggtgcaccagctggacgtggccatcccgctgcagctgaagagccag
ctgaagaagggccctccccccgcctgcagcgcccaggcagaggccgaaatcgccgagacc
atgcagttcgtcatgctcaccaggaagggcaacaagcagcagtttaagatcctgaacgtg
ccgctgtcctcacacctggccgccaatcacttcaaccagcagcaggcggagcaggaggag
cgcatgcgcatgaagaagctcacactggacatcaacgagcggcaggagcaggaggactac
caggagatgatgcagtccctggcccagcggccggcccccgccaacaccaaccgagagcgc
cggccgcggtaccagcaccccaagggcgcgcccaacgccgacctcatcttcaagaccgga
ggaagatactacacgtacaagtga
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