Conger conger (European conger): 133135808
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Entry
133135808 CDS
T10633
Symbol
pabpc4
Name
(RefSeq) polyadenylate-binding protein 4
KO
K13126
polyadenylate-binding protein
Organism
ccog Conger conger (European conger)
Pathway
ccog03015
mRNA surveillance pathway
ccog03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccog00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133135808 (pabpc4)
09123 Folding, sorting and degradation
03018 RNA degradation
133135808 (pabpc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccog03019
]
133135808 (pabpc4)
03041 Spliceosome [BR:
ccog03041
]
133135808 (pabpc4)
Messenger RNA biogenesis [BR:
ccog03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
133135808 (pabpc4)
mRNA cycle factors
Stress granule specific factors
133135808 (pabpc4)
Spliceosome [BR:
ccog03041
]
Complex C
Other components
Complex C specific factors
133135808 (pabpc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_7
RRM_5
RRM_10
RBD_RDR6
DUF6262
POP1_C
ApbA_C
Motif
Other DBs
NCBI-GeneID:
133135808
NCBI-ProteinID:
XP_061109077
LinkDB
All DBs
Position
1:complement(94571905..94596676)
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AA seq
638 aa
AA seq
DB search
MNTATTGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNF
QQPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTF
SAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKER
EAELGAKAKEFTNVYIKNFGEDMDDDRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYE
KHEDANKAVEDMNGTELNGKAVFVGRAQKRMERQAELKRKFEQLKQERISRYQGVNLYIK
NLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVG
SKPLYVALAQRKEERKAHLTNQYMQRIAGMRAVPANAIINQFQPPGGYFMPAVPQAQNRT
TYYAPNQLAQMRPNPRWQQQGGRAQGGFQGMPNSLRQPGPRANLRHLAPGANTQGPRGMT
SGGQRMAGGGQPLGPRPSMGVPTPRAMPPYKYASTVRNSQPQGVQPIALQQAQPAVHVQG
QEPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESHE
SLRSKVEEAVAVLQAHQAKKDATQKVGVITTATAAATS
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atgaacacagcgacaacggggagttatccgatggcttctctctacgttggcgacctgcac
cccgacataaccgaggcaatgctctacgagaaattcagcccggccggacccgtgctgtcc
attcgcgtctgtcgcgacatgatcacccgacgttccctgggttacgcctatgtgaacttt
cagcaacccgcagacgcggagcgagctctcgacaccatgaacttcgacgtggtgaagggg
aagcccattcgaatcatgtggtcccagagggacccctcgctcaggaagtccggggtgggg
aacgtcttcatcaagaacctggacaagtccatcgacaacaaggccctctatgacaccttc
tctgcattcggaaacatcctgtcctgcaaggtggtgtgcgatgagaacggctctaaaggc
tacgccttcgtgcacttcgagacacaggatgccgccgaccgcgccattgagaagatgaac
ggcatgctgctgaacgaccgcaaggtgtttgtgggacgtttcaaatctcggaaggagagg
gaggccgagctgggagccaaagccaaggagttcaccaacgtctacatcaagaactttggc
gaggacatggatgatgacaggctcaaagagctctttgacaagtacggaaaaaccctcagt
gtgaaagtgatgaccgatcccaccgggaagtcacgaggattcggcttcgtcagctacgag
aagcacgaagacgccaacaaggcggtggaggatatgaacggcacagagctgaacgggaag
gcggtgttcgtgggccgggctcagaagaggatggagcggcaggcggagctgaagaggaag
tttgagcagctgaagcaggagcgaatcagcagataccagggtgtgaacctctacatcaag
aacttggacgacaccattgacgatgaaaaattgcgcaaggaattctctccctttggctcc
ataaccagtgccaaagtgatgctggaggagggccgctcgaagggcttcgggttcgtgtgc
ttctcgtcgcccgaggaggccaccaaggcggtgacggagatgaacggccgcatcgtgggc
tccaagccgctgtacgtggcgctggcccagcgcaaggaggagcgcaaggcccacctcacc
aaccagtacatgcagcgcatcgccggcatgcgcgctgtccccgccaacgccatcatcaac
cagttccagccgccgggaggatacttcatgcccgccgtgccccaggcccagaacagaaca
acctactatgcgcccaaccagcttgcccagatgcggcccaaccctcgctggcagcagcag
gggggccgggcccaaggtgggttccagggaatgccgaactcactgcgccaaccaggtcct
cgtgccaatctgagacacctggcccccggggccaacacgcaggggccccgtggcatgacc
tccggggggcagagaatggctggtgggggtcagcccctggggccccgcccatccatgggg
gtccccaccccccgcgccatgccgccctacaaatacgcctccaccgtgaggaacagccag
ccgcagggcgtgcagcccatcgctctgcagcaggcccagccggctgttcatgtacagggc
caggagccactcaccgcgtccatgctggctgcagccccgccccaggaacagaaacagatg
ctcggtgaacgtctgttccccctgatccaggcgatgcaccccagcctcgctggcaagatc
actggcatgctgctggagattgacaactcggagctgctgcacatgctggagtcccacgag
tctctgcggtccaaggttgaggaagccgtcgccgttctgcaggcccaccaggctaagaag
gacgccactcagaaagtgggggtcatcaccacggcaacggctgcagccacttcctga
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