Conger conger (European conger): 133136768
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Entry
133136768 CDS
T10633
Symbol
ddx39b
Name
(RefSeq) LOW QUALITY PROTEIN: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ccog Conger conger (European conger)
Pathway
ccog03013
Nucleocytoplasmic transport
ccog03015
mRNA surveillance pathway
ccog03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccog00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133136768 (ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
133136768 (ddx39b)
03015 mRNA surveillance pathway
133136768 (ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccog03019
]
133136768 (ddx39b)
03041 Spliceosome [BR:
ccog03041
]
133136768 (ddx39b)
Enzymes [BR:
ccog01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133136768 (ddx39b)
Messenger RNA biogenesis [BR:
ccog03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
133136768 (ddx39b)
Spliceosome [BR:
ccog03041
]
Complex C
Other components
EJC/TREX
133136768 (ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
133136768 (ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
133136768
NCBI-ProteinID:
XP_061110470
LinkDB
All DBs
Position
9:complement(58710312..58725229)
Genome browser
AA seq
435 aa
AA seq
DB search
MTENDVENELLDYEEDEVDGEVVGDGLGGVVGEALTHRKEGVKGSYVSIHSSGFRDFLLK
PELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQ
VSVLVMCHTRELAFQISKEYERFSKYMPAVKVGVFFGGLSIKKDEEVLKRESPHVVVGTP
GRILALSRNKTLNLRHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSR
EIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIF
VKSVQRCVALAQLLVEQNFPAIAIHRGMPQEERLARYQQFKDFQRRILVATNLFGRGMDI
ERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDEGDARTLNDVQDRFEVNISE
LPEEIDISSYIEQTR
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgacggagaatgacgttgagaacgaacttttggactacgaggaggacgaggtggacggt
gaagtggtcggcgacgggctcgggggcgtcgtcggggaggcgctgacgcaccggaaggag
ggcgtgaagggatcgtacgtctccatccactcgtccgggttcagggacttcctgctcaag
ccggagctgctgagggccatcgtggactgcgggttcgagcatccgtcagaggtgcagcac
gagtgcatcccccaggccatcctgggcatggacgtgctgtgccaggccaagtcaggcatg
ggcaagacggccgtgttcgtgctggccaccctgcagcagctggagcccgtcaccgggcag
gtgtccgtgttggtgatgtgtcacactcgagagctggcctttcagatcagcaaggagtac
gagagattctccaagtacatgcccgccgtcaaggtgggcgtgttcttcggaggcctgtcc
attaagaaggacgaggaggtgctgaagagggagagcccccacgtggtggtgggcacgccg
gggcggatcttagccctgtcccgaaacaagaccctcaacctgcggcacatcaagcacttc
atcctggatgagtgcgacaagatgctggagcagctcgacatgcgtcgggatgtgcaggag
attttccgcatgactcctcacgagaagcaggtgatgatgttcagtgccaccctgagcaga
gagatccgcccagtctgccgaaagttcatgcaagatccaatggaaatctttgtggacgat
gagactaaactgaccctgcacggcctccagcagtactacgtcaagctcaaggacaacgag
aagaacaggaagctctttgatctgctggacgtgctggagttcaaccaggtggtgatcttt
gtgaagtcggttcagcgctgtgttgctctggctcagctactggtggagcagaactttccc
gccatcgccatccacaggggcatgcctcaggaggagaggctggcccgctaccagcagttc
aaggactttcagaggcgcattctagtggccaccaacctgttcgggcggggcatggacatc
gagcgagtgaacatcgccttcaactacgacatgccggaagattccgacacctacttacac
agggtggctcgagcagggcgtttcggtacgaagggtttggccgtcacctttgtctcagac
gagggtgatgcacgcacgctgaacgatgttcaggatcgattcgaggtcaacatcagcgag
cttccagaggagatcgacatctcgtcctacattgaacagacccgataa
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