Conger conger (European conger): 133137178
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Entry
133137178 CDS
T10633
Symbol
lig1
Name
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
ccog Conger conger (European conger)
Pathway
ccog03030
DNA replication
ccog03410
Base excision repair
ccog03420
Nucleotide excision repair
ccog03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccog00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
133137178 (lig1)
03410 Base excision repair
133137178 (lig1)
03420 Nucleotide excision repair
133137178 (lig1)
03430 Mismatch repair
133137178 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccog03032
]
133137178 (lig1)
03400 DNA repair and recombination proteins [BR:
ccog03400
]
133137178 (lig1)
Enzymes [BR:
ccog01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
133137178 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
133137178 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
133137178 (lig1)
DNA replication proteins [BR:
ccog03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
133137178 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
133137178 (lig1)
DNA repair and recombination proteins [BR:
ccog03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
133137178 (lig1)
NER (nucleotide excision repair)
Other NER factors
133137178 (lig1)
MMR (mismatch excision repair)
Other MMR factors
133137178 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
133137178
NCBI-ProteinID:
XP_061111254
LinkDB
All DBs
Position
9:complement(8122360..8139233)
Genome browser
AA seq
877 aa
AA seq
DB search
MQRSIASFFQPKGKKKEENSAPGKVKNEPVKSPLKPQNGFVASDSPVKKVSKRSRPVISS
DDEEEEEVAGKQEAAAAPPSQEKEAAVRSPAPATPCTPVSPAGAVTPVTPATPAPAAAAA
SPSTPSSISPSGIPKRKTARKQFPKRKLDCANRDDDDDEEEGDEERQEVKRAKLEPAEGE
RPPVTTENKPEVKEEEEEEMEQEQEQEAEPVRGEEEDAPVKEKREEEPTVAKEKEKPSVK
AKPTNSFFAPRKVAVKLERPPEKRGGGKEVQGDGEGEGEEEEEKNEEKEEKKEEKKEKKK
EKKASSKSDSGCNPEDYNPSHAKYHPVDHACWNRGQRVPYLAVARTLEKIEEESGRLKNI
ETLSNLLRSVLVLSPDDLVCCVYLCLNQLGPAYLGVELGVGEMVLMKAVAQATGRQLDKI
KAEAQEKGDLGLVAESSRSNQRMMFVPASLTAAGVFAKLKDIAKMAGNSSMNKKIDIIKG
LFVACRHSEARYIVRSLAGKLRIGLAEQSVLAALSQAVSLTPPGQDFPPQVLDAGLGKSA
ESRRSWLEENALILKQTYCEMPNYDVIIPVLLKEGIKELPKHCKLTPGVPLKPMLAHPTK
GVSEVMKRFDEAAFTCEYKYDGERAQIHILENGNVHVFSRNQEDNTTKYPDIISRIPGVK
RESVRSCIVDXEAVAWDREKKQIQPFQVLTTRKRKVGCDASEIKVQVCVYAFDLLYLNGE
SLVKEPLSRRRALLKESFEAREGEFVFAQALDTDSTDTIGEFLEQSVRDSCEGLMVKTLE
KDATYEIAKRSHNWLKLKKDYLDGVGDTVDLCVIGAYLGKGKRAGPMGWFLLACYDQENE
EFQSICKIGTGFKDEDLEQHFNLFKVQTHFRSLNLQI
NT seq
2634 nt
NT seq
+upstream
nt +downstream
nt
atgcagagaagtattgcttcttttttccagcccaaggggaagaagaaagaggagaacagc
gctccaggaaaagtgaaaaatgagcccgtcaaatctccgctcaaaccccagaacgggttt
gtggcgagcgattcgccggtgaagaaggtcagcaagcgcagtcggccagtcataagcagc
gatgacgaggaggaagaggaggttgctgggaagcaggaggcggcggccgccccgccctcg
caagagaaggaggcagcagtgaggagccctgctccagccactccctgtactcccgtttcc
ccggctggtgccgttaccccggtgacccccgccactcctgctcctgctgcggctgccgcc
tctcccagcaccccgtcctccatctccccgagcgggatccccaaacgcaagaccgcccgg
aaacagtttcccaagagaaagctggactgcgccaatcgtgacgatgatgatgatgaggag
gagggggatgaagagcggcaggaggtgaagagggccaagctggagccggccgagggcgag
agacctccggtcactacagagaacaaaccagaagtaaaggaggaggaggaggaggagatg
gaacaggaacaggaacaggaagcagagccagtgagaggggaggaagaggacgccccagtg
aaggagaagagagaggaagagccgaccgtagcaaaggagaaagaaaaaccatccgttaag
gcaaaacccacaaacagcttctttgcccccaggaaggtggcggtgaagctggagagaccg
ccggagaagagaggaggtgggaaggaggtgcagggagacggggagggggagggagaggag
gaggaggagaagaatgaggagaaggaggagaagaaggaggagaagaaggagaagaagaag
gagaagaaggccagcagtaagagtgactctggctgtaaccctgaagactacaacccttca
cacgccaagtaccaccctgtggatcacgcctgctggaaccggggtcagagggtcccatac
ctggctgtggcgcgtaccctggagaagattgaggaggagtcgggcagactgaagaacatc
gagaccctttcaaacctgctgcgctctgtgctggtcctctcaccagatgacctggtgtgc
tgtgtgtacctctgtctgaaccagctgggccccgcctacctaggggtggagcttggcgtg
ggagagatggtgctgatgaaggctgttgcccaggcaaccgggcgacagctggacaagatc
aaggcggaggcccaggagaagggggacctgggattggtggccgagagttcccgtagcaac
cagaggatgatgttcgtgccggccagcctgacggcggcgggcgtgttcgccaagctgaag
gacatcgccaagatggctgggaactcttccatgaataagaagattgacatcataaagggc
cttttcgtggcctgcagacactccgaggcccggtacatcgtcaggtctctggcggggaag
ctcaggatcgggctggcagagcagagtgtgctggcggccctgagccaggccgtgtccctc
acccctcctggacaagatttccctccccaggtcctggatgctggtttggggaagtctgcg
gagagtaggcggagctggctggaagagaacgccctcatcctgaaacagacatactgtgag
atgcccaactatgatgtcatcattcctgtcctcctgaaggagggaattaaagaactgccc
aagcactgcaagctcacgccgggcgttcctctgaagcccatgctggcccaccccactaag
ggcgtgtctgaggtgatgaagcgctttgatgaagctgctttcacctgcgaatacaaatat
gacggagagagagctcagatccacatcctggagaacgggaacgtgcacgtcttcagccgc
aatcaggaggacaacaccaccaaataccccgacatcatctccaggataccaggggtgaag
agggagtccgtgcgctcctgcatcgtggacngcgaggccgtggcctgggaccgggagaag
aagcagatccagcccttccaggtgctgaccacgcgcaagagaaaggtgggatgtgacgcg
tctgagatcaaggtgcaagtgtgcgtttacgccttcgacctgctctacctgaacggagag
tctctggtgaaggagcccctctctcgccgacgggccctgctgaaggagagctttgaggcg
cgggagggagagtttgttttcgcccaagcgctggacactgacagcacagacaccatcggg
gagttcctggagcagtctgtccgagactcgtgtgaggggctcatggtcaagactctggaa
aaagatgctacctatgaaatcgccaagcgctctcacaactggctcaagctgaagaaggac
tacctggacggcgtgggggacacggtggacctgtgtgtgatcggggcgtacctgggcaag
ggcaagagggccgggcctatggggtggttcctgctggcctgttacgaccaggagaacgag
gagttccagtccatctgcaagatcggaacggggttcaaggacgaagacctggagcagcat
ttcaacttatttaaggtacaaactcatttcaggtccttaaacctacagatctaa
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