Conger conger (European conger): 133140010
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Entry
133140010 CDS
T10633
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ccog Conger conger (European conger)
Pathway
ccog03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccog00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133140010 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccog03019
]
133140010 (mtrex)
03041 Spliceosome [BR:
ccog03041
]
133140010 (mtrex)
03009 Ribosome biogenesis [BR:
ccog03009
]
133140010 (mtrex)
03016 Transfer RNA biogenesis [BR:
ccog03016
]
133140010 (mtrex)
Enzymes [BR:
ccog01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133140010 (mtrex)
Messenger RNA biogenesis [BR:
ccog03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
133140010 (mtrex)
Spliceosome [BR:
ccog03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
133140010 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
133140010 (mtrex)
Ribosome biogenesis [BR:
ccog03009
]
Eukaryotic type
Pre-60S particles
Helicases
133140010 (mtrex)
Transfer RNA biogenesis [BR:
ccog03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
133140010 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Stealth_CR1
Motif
Other DBs
NCBI-GeneID:
133140010
NCBI-ProteinID:
XP_061115503
LinkDB
All DBs
Position
11:complement(9504383..9531549)
Genome browser
AA seq
1035 aa
AA seq
DB search
MADAFGDELFSVFEEEQLSSKKRKSTGTGTPPGKDGQHGKDKAEHSSAAQGKQDLDDGPD
EVIFGKKPKLETVSAEEINLADLMPKVKVEQVETVEGCTHEVALPADEDYTQLKPRVGKA
AKEYPFILDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIK
ALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVVFD
EIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDYR
PTPLQHYIFPAGGDGLHLVVDENGEFREDNFNTAMQVLRDTGDSGGSGGGKWDPKGRKGG
TRGPSNVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNTDEEKKLVEEVFNNA
IDCLSDEDKKLPQVEHVLPLLKSGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAM
GINMPARTVLFTSARKYDGKDFRWITSGEYIQMSGRAGRRGMDERGIVIFMVDEKMSPTV
GKQLLKGSADPLNSAFHLTYNMVMNLLRVEEINPEYMLEKSFYQFQHYRAVPGVIEKMGK
LEAQYNAIEIPNEESVVTYYKIRQQLVKLGKEIEEYIHKPKYCLPFLQPGRLVKVKNESD
DFGWGVVVNFSKKANVKANTGELDPLYVVEVLVHCSKESVKNAATESAKPAKSGEKGEMQ
VVPVMLHLLTTISSVRLYIPKDLRPPDNRQSVLKSIQEVQKRFPDGVPVLDPIDDMGIKD
PGLKKVIQKVEAFEHRMYSHPLHNDPNLESVYNLCERKAKIAGDIKTAKRELKKARTVLQ
MDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMIFNGLFNDLTAEQATA
LLSCFVFQENASEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLDVDEETYLNTFRPHLM
DVVYTWANGSSFSQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGI
TKIKRDIVFAASLYL
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcctttggagatgagctgttcagtgtttttgaggaggaacaactatcctct
aagaaacgaaaaagcactggtactggaacacctccaggaaaagacggtcagcatggaaaa
gacaaggctgaacacagttctgctgctcagggcaagcaagacctggacgatggcccggac
gaggtcatctttgggaagaagcccaagctcgagacggtgtctgcagaggaaataaatctt
gcagacctgatgcccaaagtgaaggtagagcaggttgagacggtggagggctgcactcat
gaggtggccctgccagccgatgaggattacacacagctgaagcctcgagttgggaaagca
gctaaggagtaccctttcattctggatcctttccaaagggaggcgattctctgcattgac
aacaaccagtctgtcctggtctctgcccacacctctgctggcaagactgtctgcgcagaa
tatgccattgccctggctctgagagagaagcagcgggttatattcaccagtcccatcaaa
gccctcagtaaccagaaataccgggagatgtacgaagagttccaggatgtgggcctcatg
accggtgatgtcaccatcaaccccaccgcctcctgcctggtcatgaccactgaaattttg
agaagcatgctgtacagagggtcggaggtcatgagggaggtggcttgggtcgtttttgat
gagattcattacatgagagattccgagcgtggtgtcgtgtgggaggagaccatcatcctc
ctcccggacaacgtgcactacgtcttcctttccgcaaccatccccaatgccaggcagttc
gccgagtggatctgccatcttcacaagcagccatgtcacgtgatttacacagactaccgc
cccactccactgcaacactacatctttccagcaggtggcgacggacttcaccttgtcgtg
gacgagaacggagaattccgtgaggacaacttcaacacggctatgcaggtgctgagagac
accggagactctggggggagtggtggggggaagtgggaccccaaaggccggaagggagga
acaagaggcccgtcgaatgtctttaagatcgtgaagatgatcatggagagaaacttccag
ccggtcatcatcttcagcttcagtaagaaggagtgcgaggcctatgcactacaggtggca
aagctggacttcaacactgatgaagagaagaaacttgtggaggaggtgtttaacaatgcc
atcgattgcctgtcagacgaagacaagaagcttccacaggtggagcacgtcctgcccctg
ctgaagagcggcattgggattcaccatggaggcctgctccccatcctgaaggagaccatc
gagatcctcttctctgaaggcctcatcaaggccctgtttgccacggagacctttgccatg
ggaatcaacatgccggcccgcacagtgctgttcacgagcgctcgcaagtacgacggaaaa
gacttccgctggatcacctccggggagtacattcagatgtctggccgggctggtaggcga
ggcatggacgagagagggatcgtgatcttcatggtggacgagaagatgagcccaacggtg
ggaaagcagctgctcaagggatcagctgaccccctgaacagcgccttccacctgacctac
aacatggtgatgaacctgcttcgagtggaggagatcaacccagagtacatgctggagaag
tccttctaccagttccagcactatagggccgtgcccggcgtcatagagaaaatgggtaaa
cttgaagcgcagtataacgccatcgaaatccccaacgaggagagcgtggtgacctactac
aagatccgacagcagctggtcaagctcggaaaggagatcgaggagtacatccacaagccc
aaatactgcctgccgtttctgcagcccggaaggctggtcaaggtgaagaatgaaagtgat
gactttggctggggagtggtagttaatttctcaaaaaaagcaaatgtcaaggcgaacacg
ggcgagctggaccccctgtacgtggtggaggttctggtgcactgcagcaaggagagcgtg
aagaacgcggcgacggagtccgccaaacccgccaagagcggggagaagggcgagatgcag
gtggttcctgtcatgcttcatctcctcaccaccatcagctccgtgcgcctgtacatcccc
aaagacctccggcctccggacaacaggcagagcgtgctcaagtccatccaggaggtgcag
aagcgctttcctgacggcgtgcccgtcctggaccccatcgacgacatgggcatcaaagac
ccgggcctgaagaaggtcatccaaaaagtggaggccttcgagcacaggatgtactcccac
cccctgcacaacgaccccaacctggagtctgtctacaacctctgtgagaggaaggcaaag
atcgcgggggacattaagacggcgaagcgggagctgaagaaggcgcgcaccgtgctgcag
atggacgagctgaagtgccggaagcgtgtgctgaggcgcctgggcttcgccacgtcctcc
gacgtcatcgagatgaagggccgtgtggcctgcgagatcagcagcgcggacgagctgctg
ctgacggagatgatcttcaacggcctcttcaacgacctgaccgccgagcaggccacggcc
ctcctcagctgcttcgtgttccaggagaacgccagcgagatgccgaagctaacggagcag
ctggctgggcccctccgacagatgcaggaatgtgcgaagcgaatcgccaaggtgtcggca
gaggccaagctggacgtggatgaggagacgtacctgaacaccttccggccccacctgatg
gacgtggtgtacacctgggccaacgggtcctccttctcacagatctgcaagatgaccgat
gtctttgaagggagtatcattcgttgtatgaggcgtctggaggagctcttgaggcagatg
tgccaggcggccaaggccatcgggaacacagagctggagaacaagttcgcagaaggtata
acaaaaatcaagagggatatcgtgtttgctgccagtctttatttgtaa
DBGET
integrated database retrieval system
