Conger conger (European conger): 133141952
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Entry
133141952 CDS
T10633
Symbol
smarcb1b
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1b isoform X1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
ccog Conger conger (European conger)
Pathway
ccog03082
ATP-dependent chromatin remodeling
ccog03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
ccog00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
133141952 (smarcb1b)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
133141952 (smarcb1b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ccog01009
]
133141952 (smarcb1b)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccog03021
]
133141952 (smarcb1b)
03036 Chromosome and associated proteins [BR:
ccog03036
]
133141952 (smarcb1b)
Protein phosphatases and associated proteins [BR:
ccog01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
133141952 (smarcb1b)
Transcription machinery [BR:
ccog03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
133141952 (smarcb1b)
SWI/SNF complex
133141952 (smarcb1b)
Chromosome and associated proteins [BR:
ccog03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
133141952 (smarcb1b)
PBAF complex
133141952 (smarcb1b)
SWI/SNF complex
133141952 (smarcb1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
133141952
NCBI-ProteinID:
XP_061118777
LinkDB
All DBs
Position
12:26835388..26844365
Genome browser
AA seq
373 aa
AA seq
DB search
MALSKTFGQKPVKFQLEQDGDFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLASVEERKKI
VASSHDHGYTTLATSVTLLKASEVEEIFEGNDEKYKAVSISTEPPAYLREQKAKRNSQWV
PTLPNSSHHLDAVPCSTSINRNRMGRDKKRTFPLCFDDHDPAVIHENAGQSEVLVPIRLD
MEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLTFVPAIASAIRQQIESYPTDS
ILDEQTDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPETFALKLCSELGLGGEFVTTIA
YSIRGQLSWHQRTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNT
RRMRRLANTAPAW
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atggcgttgagcaaaacgttcgggcagaaaccagtgaaatttcagctggaacaggatggc
gatttttacatgattggatcagaggtaggcaactatttgcgcatgttccgtggctccctg
tacaaaaggtacccgtcgctgtggaggagactcgcgtcagtcgaagagaggaagaagatt
gtagcttcatcgcacgatcatggttacacaactttagccaccagtgtgacactgctgaag
gcgtccgaggtggaggagatcttcgaagggaacgatgagaagtacaaggcggtatccatc
agcacagagcccccggcgtacctcagggagcagaaggcgaagaggaacagccaatgggtg
ccgaccctgccgaacagctcccaccacctggacgctgtgccctgctccacctccatcaac
cgcaaccgcatgggccgggacaagaagaggaccttccccctgtgcttcgatgaccacgac
ccggcggtgatccatgagaatgcaggccagtcagaggtgctggtccctatccgcttggac
atggagattgacgggcagaagctgcgagatgccttcacctggaacatgaatgagaagctc
atgacccctgagatgtttgcggagatcctgtgtgacgacctggacctgaacccgctgacc
ttcgtgccggccatcgcctcggccatccggcagcagatcgagtcctaccccaccgacagc
atcctggacgagcagaccgaccagcgcgtcatcatcaagctgaacatccacgtggggaac
atctctctggtggaccagttcgagtgggacatgtcggagaaggagaactctccggaaacc
ttcgccctgaagctgtgctcggagctgggcctgggcggcgagttcgtcaccaccatcgcc
tacagcatccgcggccagctcagctggcaccagaggacctacgccttcagtgagaacccc
ctgcccaccgtggaaatcgccatccgcaacaccggtgacgctgaccagtggtgcccccta
ctggagaccctgactgacgcggagatggagaaaaagatccgggaccaggacaggaacacc
aggcggatgaggaggctggccaacactgccccggcctggtaa
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