Clostridium cochlearium: SAMEA4530647_0184
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Entry
SAMEA4530647_0184 CDS
T06756
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
ccoh
Clostridium cochlearium
Pathway
ccoh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ccoh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
SAMEA4530647_0184 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccoh03400
]
SAMEA4530647_0184 (recD)
Enzymes [BR:
ccoh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
SAMEA4530647_0184 (recD)
DNA repair and recombination proteins [BR:
ccoh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SAMEA4530647_0184 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
OB_YrrC
SH3_13
UvrD_C_2
HHH_5
Viral_helicase1
AAA_11
AAA_28
Helicase_RecD
HHH
SLFN-g3_helicase
PIF1
AAA_22
HHH_2
DNA_pol_lambd_f
PhoH
DEAD
nSTAND3
UvrD_C
NTPase_1
HHH_3
UvrD-helicase
IMS_HHH
AAA_17
ABC_tran
AAA_25
CHD1-like_C
AAA
SRP54
AAA_29
Motif
Other DBs
NCBI-ProteinID:
SNV65067
LinkDB
All DBs
Position
1:175177..177408
Genome browser
AA seq
743 aa
AA seq
DB search
MEEIQGTVDSIIFRNDENGYVVSRIKEDANSITTIVGCIPYISEGQNLKLYGEWVIHPQF
GRQFKVESCEEIIPDTKKGIERYLSSGIIPGIGPVTAKKIVQKFGLKTFHILENDIERLK
EIEGIGDKKIGIIQESYEDQKEVRNIMMFFQEYGISINHCLKIYKKFKSESIRIVKENPY
ILTETISGIGFKTADKIAKNLGVDINSPFRIQSGINYVLNQFSALGNTCMPADKLIKDGK
EILNVEEEEIKENVLQSALQGKLRVEIVDGKEYIFSIPYYYCELGVTKNILKLSLYNHKD
LDMTVEEEIRNFEDNNNIKFSPSQREAIIGAFLNGVEIITGGPGTGKTTIINCISDIYEK
YGYTVCMGAPTGRAAKRMTEATGRDAKTIHRLLEMGVGEEEIFSKTEETPLECDVVIIDE
ASMIDIMLMNNLLKAISIGTRLIIVGDVDQLPSVGPGNVLKDLIESNCVKVVRLKDIFRQ
SETSAITLNAHKINSGQMPILNERNKDFFFLNGDSNENILDILLGLIHKRLPNFNKDWDK
LKHIQILSPMRKGILGVENLNRNLQKVLNPPSKEKKEKKFKDCIFRVGDKIMQTKNNYNI
KWRKIDKYDPEEGMGIFNGDIGYIEDIDEENNNMTIIFDEEKKVIYEDIYLDEIDLAYAI
TIHKSQGSEFPAVIIPAFMGPPMLMNRNLLYTGITRAKELVVVVGKLKALKFMVDNNRSF
ERYSLLKWRIQNILENFYEDNGQ
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaatacaaggaaccgttgattccataatatttaggaatgatgaaaatggatat
gttgtcagtagaattaaggaagatgctaattctataacaactatagtaggatgtatacct
tatatatcggagggacaaaatcttaaattatatggagaatgggtaattcatcctcaattt
ggaagacaatttaaagttgaaagttgtgaagaaatcattcctgatactaaaaaaggaatt
gaaagatatttatcatcaggtataattcccggaatagggcctgtaacagctaaaaaaatt
gttcaaaaatttggattgaagacttttcatatattagagaatgatattgaaagattaaag
gaaatagagggcataggagataaaaaaataggtataattcaagagtcttacgaagatcaa
aaagaagttagaaatataatgatgttttttcaagagtatggtatatctataaatcattgt
ctcaagatatataagaaatttaaaagcgaatctattagaatagtgaaagaaaatccatat
atattaacagaaactatttcaggaataggatttaaaacagcggataaaatagctaaaaat
ttaggagttgatataaattctccttttagaatacaaagtggtataaattatgtattgaat
caattttctgcattaggaaatacttgcatgccagcggataaattaataaaagatggaaaa
gaaatattaaatgtagaagaagaagagataaaagaaaatgtattacaaagtgctcttcaa
ggtaaattaagagtagaaatagtggatggaaaagaatatattttttctataccctattat
tattgtgaattaggcgtaacaaagaatatattaaaattatcattatataatcataaggat
ttagatatgactgtagaagaagaaataagaaattttgaagataataataatataaaattt
tctccttcacaaagagaagctataataggagcctttttgaatggagtagaaataataaca
ggtggacctggtacgggtaaaacaactattataaactgtatttcggatatatatgaaaaa
tatggatatactgtttgtatgggagcacctacagggagagcagcaaaaagaatgacagaa
gctacaggaagagatgcaaaaactatccacagattattggaaatgggggtaggggaagaa
gaaatattttctaaaacagaagaaactcccttagaatgtgatgtagtgataatagatgaa
gcatcaatgatagatataatgcttatgaataacttactaaaagctatatctataggaact
agacttataatagtgggtgatgtagatcaattaccatcggtaggtcctggaaatgtatta
aaagatttaatagaaagcaattgtgttaaagtagtaagattaaaggatatatttagacaa
tcagaaactagtgcaataactttaaatgcacataagataaatagtggacaaatgcctatt
ttgaatgaaaggaataaggatttcttttttttaaacggtgattctaatgagaatatattg
gatattctattaggactaattcataagagattaccaaattttaataaggattgggataaa
ttaaaacatatacaaatattaagtcctatgagaaaaggaatattaggagttgaaaattta
aatagaaaccttcaaaaagtactaaatcctccatcaaaagaaaaaaaagagaagaagttt
aaagactgtatttttagagtgggcgataagattatgcaaactaaaaataattataatatt
aagtggagaaagatagataaatatgatccagaagaaggaatgggaatattcaatggagat
ataggatatatagaggatatagatgaagaaaacaacaatatgaccattatttttgatgaa
gaaaagaaagtaatttatgaagatatttatttagatgaaatagatttggcatatgctata
actatacataaaagtcaaggaagtgagtttccagcagttataatacctgcttttatgggg
ccacctatgcttatgaataggaatttattgtatacaggaataacaagagcaaaagaatta
gtggttgtagtaggaaaattaaaagcattaaaatttatggttgataataataggagtttt
gaaagatattccttattaaagtggagaatacaaaacatactagaaaatttttatgaagat
aatggacaatag
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