Clostridium cochlearium: SAMEA4530647_0277
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Entry
SAMEA4530647_0277 CDS
T06756
Name
(GenBank) multidrug resistance ABC transporter
KO
K18888
ATP-binding cassette, subfamily B, multidrug efflux pump
Organism
ccoh
Clostridium cochlearium
Pathway
ccoh02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
ccoh00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
SAMEA4530647_0277
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ccoh02000
]
SAMEA4530647_0277
Transporters [BR:
ccoh02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB-BAC subgroup
SAMEA4530647_0277
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
AAA_22
AAA
AAA_21
RsgA_GTPase
DUF4271
ABC_membrane_3
EI24
MMR_HSR1
DEAD
AAA_23
AAA_15
AAA_29
TsaE
AAA_30
AAA_14
ATP_bind_1
Yip1
Zeta_toxin
T2SSE
AAA_24
SRP54
AAA_18
ANGEL2_N
AAA_16
AAA_19
nSTAND3
Nod1
NB-ARC
AAA_25
AAA_28
AAA_5
Motif
Other DBs
NCBI-ProteinID:
SNV66206
LinkDB
All DBs
Position
1:275983..277758
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AA seq
591 aa
AA seq
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MSKRKNAFRPVKKAKNTKGTVKRIWEYLKKENKKALWTVMLLVLITSVLGVLGPYFIGVA
IDDYISVKDVPGAIKIILILAIIYVLTAIFTWLQTYIMVIVSQRTIKDIRAELFSKLQKL
SLKFFDNNAHGDIMSRATNDIDNLNNALTQSVIQILSSILTIIGVTVAMFLLNPIMALAT
FIIIPIMFFITKYLGRLTKKSFIERQESLGDLNGLIEETIGGQDIITLFSREEYVFNKFE
EKNNKLRTTTTTAEILSGAMRPLMNFINNLGFALVVAVGGVLTLKGMATVGIIASFVNYS
RQFSRPLNQLASLYNTIQSAIAGGERVFEIIDEVPDIQDKDSAVKIETLKGEVDFTNVNF
SYKEYTPVLKNINFQCNPGETIALVGPTGSGKTTIINLLTRFYDINDGNIKIDNLDIKEY
SIKSLRRRVGVVLQDNYLFSGTIKDNIRYGRLDATDEEIIEAAKLANAHSFIKHLPKKYD
TIVTSQGENLSHGQRQLLSIARVILSNPDILILDEATSNIDTRTELQIQKGLKNLMKGRT
SFVIAHRLKTIEEADKILVIKNGEIIERGNHETLMEDEGFYHNLYVSQFKI
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaagaaaaaatgcctttcgacctgttaaaaaggcaaaaaatactaaaggtaca
gtaaaaagaatttgggaatatttaaaaaaagaaaacaaaaaggctctgtggacagttatg
ttattagttctaataacatctgtactaggggttctaggaccttattttataggagtagct
attgatgattatatttcggttaaagatgtaccaggagctataaagataatattaatatta
gctataatatatgtgttaactgctatatttacatggcttcaaacctatataatggttata
gtatcccaaagaacaataaaagatataagggcagaattattttcaaagctgcaaaaatta
tctttaaaattcttcgacaacaatgcccatggggacattatgagtagagctactaatgat
attgataatttaaataatgctctaactcaaagtgttatacaaatactttcaagtatatta
acaataataggagttacagtggccatgtttcttttaaatccaattatggctttagccaca
ttcataataatccctattatgttttttataactaaatacttaggaagattaacaaaaaaa
tcttttatagaaagacaagaatctttaggagacttaaatgggttaatagaagaaactatt
ggaggacaggatataataaccctatttagtagagaagaatatgtatttaataaatttgaa
gaaaaaaataataagttaagaacaacaactactacagcagaaatattatctggtgcaatg
cgtccacttatgaattttataaacaatttaggttttgcattagtagtagctgtaggagga
gttttaaccctaaagggtatggcaactgtaggtataattgcaagctttgtaaactattca
agacaattctcaagacctttaaatcaactagctagcttatataatacaatacaatcagct
atagctggaggagaaagagtttttgaaattatagatgaagtaccagatatacaagataag
gatagtgcagttaaaatagaaactctgaagggagaagtagattttacaaatgtaaacttt
tcatataaagaatatacaccagtattaaaaaatataaattttcaatgtaatccaggggaa
actatagctttagttggaccaacaggttcaggaaaaacaactataataaatctattaaca
agattttatgatataaatgatggaaatataaaaatagacaatttagatataaaggaatat
agtataaaatccctaagaagaagagtaggagtggttcttcaagataactatttattttct
ggaacaataaaagacaatataagatatggaaggctagatgctacagatgaagaaataata
gaagctgcaaaacttgccaatgctcactcttttataaagcatttaccaaaaaaatatgat
actattgtaacatctcaaggtgaaaatttaagtcatggccaaagacagcttttatctata
gctagagtaatactttctaatccagatatattaattcttgatgaagcaactagtaatata
gatactagaacagaacttcaaatacaaaaggggttaaaaaatcttatgaaaggtagaact
agctttgtaatagctcatagactaaagactatagaagaagcagataaaatattagttata
aaaaatggtgaaattatagaaagaggaaatcatgaaaccctaatggaagatgaaggattc
tatcataatttatatgtttcacagtttaaaatttaa
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