Clostridium cochlearium: SAMEA4530647_0484
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Entry
SAMEA4530647_0484 CDS
T06756
Symbol
sbcC
Name
(GenBank) exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
ccoh
Clostridium cochlearium
Brite
KEGG Orthology (KO) [BR:
ccoh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccoh03400
]
SAMEA4530647_0484 (sbcC)
DNA repair and recombination proteins [BR:
ccoh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SAMEA4530647_0484 (sbcC)
Archaeal homologous recombinant proteins
SAMEA4530647_0484 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
AAA_27
nSTAND_NTPase5
SMC_N
AAA_21
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
SNV69124
LinkDB
All DBs
Position
1:477740..480877
Genome browser
AA seq
1045 aa
AA seq
DB search
MKPLKLTMCAFGPYADVQVIDFTELDNRNIFLINGPTGAGKTTIFDAISYALFGEASNTN
KDRDGLRSDFASQDTITYVDLEFSLRNKKYKVTRYPQQARKKARGEGFTYKNSEAFLILP
EGNTVSGVNAVEEKINEILGINKNQFRQIVMLPQGEFRKLLEADSLEREIIFRKIFGTEP
FEKFQKILDDKRKEIYKDIAKVNTERMTNIKRIDAANQEELFNLISQEHLNIKEIILGTG
QLIEKDEKDKENYFKKIEEVNKEEIKIQNEIVLLEEDNKKIKEKEEYEKKYKGLISKKEE
YENKKNKLSQGRKALEVKILEDNFKERKNYFQIKEKEYKELEKRVNIYEKKVEESIKKLK
EEESKEDKKEEISNKLTIFNSFQNKVKEYENKKNNIQELKNNLEEKEKYYSSLDSEIKRD
RAKFNELNKQLIQLQKSEVEKEKVLSKVEERESICNDMRDFYKYYNSYLVNVKKYNTMKI
NFDKIEKNYIEFKLKYEIMEDNFKKGQAGILAKDLKDGIECPVCGSKHHPKLAKMIDGVP
TEEKLNKFKHEFDVIKEKREVILQNMSDLNGVITNSNEIISDYKLKLEKNLGKVIDEHWE
KDILNFISIKGKEIALEVQNLKERLKKIEEEHKKKINLGDSLRKLEVKIEKNSDILEQVN
KEYKDLFAKVKSEENSILEIEKEIPEEIRSVTSLDREIKNLEDTLLKLNQSLERARKEYE
TINNEYISLKTSKKGKLENLQEILKEIEKNKENMDKKIKNCGFKDYNHYLSMKLSEDELK
NLDEDIQNYNQNVKTVKFNLDKAIKNSKDLKLRDENLIKQRLEKVEEEKSQLNREYNIIF
SRLDNNRKTLKEIEKLNEKIKGKEEEYKVIGELARISNGDNDERITFERYVLAAYFDEII
DAANIRLSKMTGGRFLLVRKEEKGKGRRQEGLELEVFDNYTGKARHVKTLSGGESFKASL
SLALGLADVIQSYAGGISLDTIFIDEGFGTLDPESLDNAIETLVDLQNDGRLVGIISHVP
ELKERIDTILEIIPTKEGSRARFLV
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atgaagcctttaaagttaaccatgtgtgcatttggtccctatgcagatgtacaagttata
gattttacggaacttgataacagaaacatatttcttataaatggaccaacaggtgcagga
aaaaccactatatttgatgctataagttatgctttgtttggtgaagcatctaatactaat
aaagatagggacgggcttagaagtgactttgcatcacaggacactattacttatgtagat
ttggagttttctttaagaaataaaaaatacaaagtgactagatatccgcaacaagcaagg
aaaaaagctagaggtgaagggtttacatataaaaactcagaggcttttttaatattgcca
gaaggaaatactgtatctggagtaaatgcagtagaagaaaagataaatgaaattcttgga
ataaataaaaatcaatttagacaaatagttatgttgcctcagggggaatttagaaaactt
cttgaagcagatagcctggaaagagagattatatttagaaaaatatttggaacggaacct
tttgaaaagtttcaaaaaatattagatgataaaagaaaagaaatttacaaagatatcgcc
aaagtaaatactgaaagaatgactaatattaaacgtatagatgctgctaaccaagaagaa
ttatttaatcttataagtcaagaacatctaaatattaaagaaataattttggggacaggg
caattaatagagaaggatgaaaaagataaggaaaattattttaaaaagattgaagaagta
aataaagaagaaataaaaatacaaaatgaaatagttttactagaagaggacaataaaaag
attaaagaaaaagaagaatatgaaaaaaaatataaaggacttatttctaaaaaagaagaa
tatgaaaataaaaaaaacaaattaagtcagggaagaaaagcattggaggttaaaatactt
gaagataacttcaaggaaagaaaaaattattttcaaataaaagaaaaagagtataaagaa
ttagaaaaaagagttaatatatatgagaaaaaagtagaagaatctattaaaaaattaaaa
gaagaggaatctaaagaagataagaaagaagagatttctaacaaattaacaatttttaat
agttttcaaaataaagttaaagaatatgaaaataaaaagaataatatacaagaattaaaa
aataatttagaagaaaaagagaaatattattctagtttagatagtgaaattaaaagggac
agggctaaatttaatgagctaaacaaacaattaattcaactccaaaaatctgaagttgaa
aaagaaaaagttcttagcaaagtggaagaaagagaatctatttgcaatgatatgcgggat
ttttataagtactataattcatacttggtaaatgttaaaaaatataatactatgaaaata
aattttgataaaattgaaaaaaattatattgaatttaaattaaaatacgaaataatggaa
gacaattttaaaaagggacaggctggaatattggctaaagatctaaaagatggaatagaa
tgtccggtttgcggatcaaagcatcatccaaaacttgcaaaaatgatagatggtgtacca
acggaggagaaacttaataaatttaaacatgagtttgatgtaataaaagaaaaacgagaa
gtgattttgcaaaatatgtctgatttaaatggtgtaattaccaatagtaacgaaataata
tcagattacaaattaaaactagaaaaaaacttaggtaaagtaatagacgaacattgggaa
aaagatattttgaattttatatctataaaaggcaaggaaattgctttagaagtacaaaat
ttaaaagaaagattaaagaaaattgaagaagagcataaaaagaaaattaatttaggggac
agtcttagaaaattagaagtaaaaatagaaaaaaatagtgatatattagagcaagtaaat
aaagaatataaggatctttttgctaaagtaaaaagtgaagaaaattctattttagagata
gaaaaagaaataccagaagaaattagaagtgtaacaagtttggatagagaaataaaaaat
ttagaagatacacttttaaaattaaatcaatctttggaaagagccaggaaagagtatgaa
accatcaataatgaatatatatctttgaaaacaagtaaaaaagggaaattagaaaattta
caagaaattttgaaagaaatagaaaaaaataaagagaatatggataaaaaaataaaaaac
tgtggatttaaagattataatcattatttatctatgaaactttcagaagatgaattaaaa
aatttggatgaagatatacaaaattacaatcaaaatgttaaaactgtaaagtttaattta
gataaagcaattaaaaatagtaaagatttaaaacttagggatgaaaatcttataaaacaa
agattagaaaaagttgaagaagaaaaaagccaattaaatagagaatataatataatattt
tctaggttggataacaatagaaagactttaaaagaaatagagaaattaaatgaaaaaata
aagggaaaagaagaggaatataaggttataggagaattagctaggatatctaacggggac
aatgatgaaagaataacttttgaaagatatgtattagctgcttattttgatgaaataata
gatgctgccaatatacgtttatccaaaatgacagggggaagatttttacttgtaagaaaa
gaagaaaagggtaaaggcagaaggcaagaaggcttggaattagaggtttttgataattat
acaggaaaagctagacatgttaaaaccttatctggtggagaaagttttaaagcttcttta
tctttagcgttaggtttagcagatgttatacaatcatatgctggaggtataagtttggat
actatttttatagatgaaggttttggaactttagatcctgaatcactggataatgctata
gaaactttggtggatcttcaaaatgatggaagattggtggggataatatcacatgtacca
gaacttaaagaaagaatagataccatattagaaataattccaactaaagagggcagtagg
gcaagatttttagtgtaa
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