Clostridium cochlearium: SAMEA4530647_0549
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Entry
SAMEA4530647_0549 CDS
T06756
Symbol
gcdB
Name
(GenBank) glutaconyl-CoA decarboxylase subunit beta
KO
K20509
carboxybiotin decarboxylase [EC:
7.2.4.1
]
Organism
ccoh
Clostridium cochlearium
Pathway
ccoh00362
Benzoate degradation
ccoh00620
Pyruvate metabolism
ccoh00650
Butanoate metabolism
ccoh01100
Metabolic pathways
ccoh01120
Microbial metabolism in diverse environments
Brite
KEGG Orthology (KO) [BR:
ccoh00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00620 Pyruvate metabolism
SAMEA4530647_0549 (gcdB)
00650 Butanoate metabolism
SAMEA4530647_0549 (gcdB)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
SAMEA4530647_0549 (gcdB)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ccoh02000
]
SAMEA4530647_0549 (gcdB)
Enzymes [BR:
ccoh01000
]
7. Translocases
7.2 Catalysing the translocation of inorganic cations
7.2.4 Linked to decarboxylation
7.2.4.1 carboxybiotin decarboxylase
SAMEA4530647_0549 (gcdB)
Transporters [BR:
ccoh02000
]
Other transporters
Primary active transporters [TC:
3
]
SAMEA4530647_0549 (gcdB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OAD_beta
Motif
Other DBs
NCBI-ProteinID:
SNV69768
LinkDB
All DBs
Position
1:complement(542651..543799)
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AA seq
382 aa
AA seq
DB search
MNFSFKYIIIKLLKESGFTALTWQQLVMILIAFILIYLAIKKEFEPLLLLPISFGVLLAN
LPVTGIMSGPLANSSEPGGLLYYLYQGVKLGIYPSLIFLGIGAMTDFGPLIARPSSLFLG
AAAQFGVVMAFIIAIALGFSPQGAASIGIIGGADGPTAIFLTTRLAPELLPAIAIAAYSY
MALIPLIQPPLMKLITTEKERKIKMEQLREVSKLEKIVFPIVVTVLTILLLPSVAPLIGM
LMMGNLFKESGVVDRLSSTAQNALINIVTIFLGTTVGATARADRFLRPETLKIIALGLIA
FAFSTIGGLLLGKLMCFLSGGKINPLIGSAGVSAVPMAARVSQVEGQKANPTNYLLMHAM
GPNVAGVIGSAVAAGVLLALFG
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atgaatttttcatttaaatatataatcattaaattattaaaagaatcgggatttacagca
ttaacatggcaacaactggtaatgattcttattgcttttatccttatatatctagctatc
aaaaaagagtttgaacctcttttgcttttgcctatatcctttggtgttctattagctaat
ttaccagttacaggaataatgtctggtcctctagctaattcttcggaaccaggtggatta
ctttactatttgtatcaaggtgttaagttaggaatttatccttctttaatatttttagga
attggtgcaatgacagactttggtcctcttatcgctagaccttcaagtttatttctaggt
gctgcagctcaatttggtgttgttatggcctttattattgcaattgcattaggcttttca
cctcagggcgcagcttctataggtattattggtggagcagatggtcctactgcaatattt
ttaactacaagacttgctccagaattgctaccagccatagccattgcagcttattcttat
atggctttaattcctcttattcagcctcctttaatgaaacttataactacagaaaaagaa
agaaaaattaagatggaacaactaagagaagtatctaaactagaaaaaatagtatttcct
atagttgtaacagtacttacaattttattacttccttctgtagcacctcttataggaatg
ttgatgatgggaaatttatttaaagaatctggagttgtggacagactttcttccacagca
caaaatgcattaattaatatagttaccatttttcttggtactactgtaggtgctactgct
agagcagacagatttttaagaccagaaactttaaaaattatagctcttggacttattgcc
tttgcttttagcactataggtggattacttttaggaaaacttatgtgctttttatctgga
ggaaaaatcaatcctcttataggttccgctggtgtttcagcagttccaatggctgcaaga
gtttctcaggttgaaggacaaaaagcaaacccaacaaattaccttcttatgcacgcaatg
ggtcctaatgtagcaggagttataggttctgctgttgctgctggagtattattagccttg
tttggatag
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