Clostridium cochlearium: SAMEA4530647_0579
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Entry
SAMEA4530647_0579 CDS
T06756
Symbol
addB
Name
(GenBank) ATP-dependent nuclease subunit B
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
ccoh
Clostridium cochlearium
Brite
KEGG Orthology (KO) [BR:
ccoh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccoh03400
]
SAMEA4530647_0579 (addB)
Enzymes [BR:
ccoh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SAMEA4530647_0579 (addB)
DNA repair and recombination proteins [BR:
ccoh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
SAMEA4530647_0579 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ADDB_N
PDDEXK_1
UvrD_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
SNV70183
LinkDB
All DBs
Position
1:572301..575750
Genome browser
AA seq
1149 aa
AA seq
DB search
MSLRFIYGRAGSGKSYYCFQDIKRKIEEDNDKKLILLVPEQFSFQSEKNLINYIGEKAVS
RAEVLSFKRMAYRVFNEVGGITHRYMNEAGKNMLLYGILNELKGELKIFNNAADKNGFVS
TLSDIITEFKRYNLPPEMIKEYLEAAENREDNILKGKLQDIYLIYSKFQDSIKEKFIDEE
EDLTILADKLKESKYFDGSYIWVDEFFDFTPQEYSVLEQLLLKAEKVNITLCTEGLSGGE
DVDNLDLFLPVKTTEEKILEIVERNNIKYEKPVKLNCSPCYRFKNSKELSHMEKNLFSFP
YEVYEKYTEDICVFQALNEYSEIEYTARDIIKLVRDKNFRYKDIAVITGDLQGYESLIQA
VFTEYGIPYFIDKKVQVDNNPLVIFILSSLEILNKNWNYESVFRYLKTGLAGVERDEIDI
IENYVLANGIRGKRWIEEKDWDYKILYGFDLSEEKEAEQEEKLNKINEIRKKITEPLIEF
HNNIKGELTPKNLCLELYNFLEKMNIASKIENWIKYFNKVNRLDKINEYKQIWDVAIGLM
EQLVEVMEDEKLNSKTLENIFKSGFEQYELGIIPPSLDQVLVSSTTRLRSHEIKALYIVG
TNDGIFPSVLDEDGILSDLERESLRENGLEVAKDSKSRAFEEQFLMYVTLTTMSEYLRIS
YPISNEEGKTLRPSIIISRLRKIFPNLCEKSNIIKEEEDIEKVSSPKPTFNEFITQLQVG
EDEIDLSDIWLSVYNWFMNNKEWKEKFINISQGFNHTNYAEIVDTRRVRKLYGSKLNMSV
SRLEKFSQCPFAYFIRYGINAKERKIYKVSTPDIGTLMHDVIENFSRYIEGENISWEQID
ENLCQSLVSAMIDEKIKDMKGSILNSSPRYKYMTNRIKDILSKSMEVISKQISRGDFEPS
AYELAFGFNGDFPPISIELSSGERVNLIGRIDRVDKLENEDATFVRIIDYKSGKQDFSLS
DIYYGLQIQLLVYLDALLQEIENTMKKQVNPAAMLYFNMDDPLISTKKEMTKEEAEKEVL
KKLKLKGLVLKDADIIKAMDNLISGYSDIISVRVNKDGSPSKNSSVADLEDFQLLRKYVR
KLIVELCEEMLEGNISIKPYKKSNYTPCGFCDYSPICQFDTSIKGNQYRFINDKKDDEVL
QCIREEMKE
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgagtttgagatttatatatggaagggcaggaagtggtaaaagttattattgttttcag
gatataaaaagaaaaatagaagaagataatgataaaaaattaatattgcttgtaccggaa
cagttctcctttcaaagtgagaaaaatttaataaattatataggagaaaaggcagtttca
agagcagaggttttaagttttaaaaggatggcatatagggtttttaatgaagtagggggc
ataacccatagatatatgaatgaggcaggaaaaaatatgctattgtatggcatattgaat
gaattaaaaggggaacttaaaatatttaataatgctgcggataaaaatggttttgtatct
actttatcagatattataacagagtttaaaagatataatttacctccagaaatgataaaa
gagtatttggaagctgcagaaaatagagaagataatatattaaaaggtaaacttcaggac
atatatttaatatattctaaatttcaagatagtataaaagaaaaatttatagatgaggaa
gaagacctaactatattagcagataaacttaaagaatcaaagtattttgatggatcttat
atttgggtagatgagttttttgactttactcctcaagagtactcagtattagaacaattg
cttttaaaagcagaaaaagtgaatataactttatgtactgaggggctaagtggaggagaa
gatgtagataatttagatctattccttcccgtaaaaactacagaagaaaaaattttagaa
attgtagaaagaaataatattaagtatgaaaaaccagtaaagcttaattgttcaccttgc
tatagatttaaaaatagtaaagaattaagtcatatggagaaaaatttattttcatttccc
tatgaagtttatgaaaagtatacagaggatatatgtgtttttcaggctttaaatgagtat
agtgaaatagagtatacggcaagagatataataaaacttgtaagggataaaaactttaga
tataaagatatagcagtaattactggagacttacaaggatacgaaagtttaatacaagcg
gtttttacagagtatggaataccttattttatagataaaaaagttcaagtggataataac
cccttagtaatttttatattgtcttccttagaaattttaaataaaaattggaattatgaa
tccgtatttagatatttaaaaacagggcttgcaggtgtagaaagagatgaaatagatatt
atagaaaactatgtattggcaaatggaataaggggaaagaggtggatagaagaaaaggac
tgggattataaaatattatatggttttgatttaagtgaagagaaagaagcagaacaggaa
gaaaaattaaataaaataaatgaaattagaaaaaaaataacagaaccacttatagagttt
cataacaatataaagggggaacttactcctaaaaatctttgtttagaactatataatttt
ttagagaaaatgaatatagccagtaagatagaaaattggataaaatattttaataaagta
aatagattagataaaataaatgaatataagcaaatatgggatgttgccataggacttatg
gaacagcttgtagaggttatggaagatgaaaaattaaatagtaaaaccctagaaaatata
tttaaaagtggttttgagcaatatgaattaggaattatacctccgtccttagatcaagtt
cttgtaagtagtactacaaggcttagaagtcatgaaataaaagctctttacatagtggga
accaacgatggtatttttcctagtgtattagatgaagatggaatactatcagatttagaa
agagagagtttaagagaaaatggattagaggtagcaaaagatagtaaaagcagggctttt
gaagaacaatttttaatgtatgtaactcttacaactatgagtgaatatttaagaataagt
tatccaatatccaatgaagaaggaaaaaccctaagaccttccattattatatctagactt
agaaaaatattccctaatctatgtgaaaaaagcaatataattaaagaagaagaggatata
gaaaaagtatcatcgcctaaaccgacttttaatgaatttataacccaattacaagttgga
gaagatgagatagatttaagtgacatatggttgtcagtttataattggtttatgaataat
aaagaatggaaagagaaatttataaatatatcacaaggatttaatcatacaaattatgca
gaaatagtagacacaagaagagtaaggaaattatatggatcaaaattaaatatgagtgta
tccagattagaaaaattttctcaatgtccttttgcatattttattagatatggtataaat
gctaaggagagaaaaatatataaagtttccacaccagacattggaactcttatgcatgat
gtaatagaaaacttttcaagatatatagaaggagagaatatttcctgggaacaaatagac
gaaaacttatgccaaagtcttgtatctgcaatgatagatgagaaaataaaagatatgaaa
ggctctatattaaatagttctccaagatataagtatatgactaatagaattaaagatata
ctttctaaatccatggaggtaatttctaagcaaataagtaggggagattttgaaccttca
gcttatgaattagcctttggatttaacggagattttccacctatatctatagaacttagt
tccggagaaagggtaaatttaataggaagaatagatagggtagataaattagaaaatgaa
gatgctacctttgtaagaataattgattataaatcaggtaaacaggattttagtttatca
gatatatactatggtctccaaattcagctattagtatatttagatgcactacttcaagaa
atagaaaatactatgaaaaaacaagttaatccagcagcaatgttatattttaatatggat
gatccattaataagcaccaaaaaagaaatgactaaggaagaagcagaaaaggaagtttta
aaaaaattaaagttaaaaggattagttttaaaagatgctgatataataaaggctatggat
aatttaataagtggatattctgatataatttctgttagagtaaacaaagatggctctcct
tctaaaaattcttctgtagcggatttagaggattttcaattattgagaaagtatgttaga
aagctaatagttgaactttgtgaggaaatgttagaaggtaatataagtataaaaccctat
aagaaaagtaattatactccttgtggattttgtgattattccccaatatgtcaattcgat
acttccataaagggaaaccaatatagatttataaatgacaaaaaagatgacgaagtttta
caatgtataagagaagaaatgaaagaatag
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