Clostridium cochlearium: SAMEA4530647_0596
Help
Entry
SAMEA4530647_0596 CDS
T06756
Symbol
addA_1
Name
(GenBank) ATP-dependent nuclease subunit A
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
ccoh
Clostridium cochlearium
Brite
KEGG Orthology (KO) [BR:
ccoh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccoh03400
]
SAMEA4530647_0596 (addA_1)
Enzymes [BR:
ccoh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SAMEA4530647_0596 (addA_1)
DNA repair and recombination proteins [BR:
ccoh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
SAMEA4530647_0596 (addA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
DEAD
ResIII
AAA_30
Cullin_Nedd8
Catalase-rel
AAA_12
Motif
Other DBs
NCBI-ProteinID:
SNV70323
LinkDB
All DBs
Position
1:591062..594823
Genome browser
AA seq
1253 aa
AA seq
DB search
MKWTNEQRKAIETKDCNLLVAAAAGSGKTAVLVQRIIEKIMDKENPVDIDRLLIVTFTKA
AASEMKERIGAAISEELDKNPDSKILQRQLTLLNRANITTIHSFCLKVIKNNFHLIDIDP
TFRVADETESILLKQEALEEVFENIYYEENCTKEFKELLDSFGGKSDRKLLEVVESLYNF
SQSLSWPFKWLNEKIESFNIGKNYDFSKSIWATTLKENIKIELNGVKNQLKSSLNILGEY
NEELIDYIEVVENELKYVKELLEGEETDIIKGLLYFDLGRLPGKRLKGEVKDTKDRAIKL
RDKAKESINKLKEDINLGYENVEKNMKELYPRMKCLIDLVMKFTMEYDKRKREKNIIDFN
DIEHFALEILTDFDKEEKVIPSSVALEYRNKFEEVLVDEYQDSNFVQEAILNSISRQDNL
EETIEDEKLIIPNLFMVGDIKQSIYRFRQAKPELFLEKYDNYSEEEGNKYRKIKLFKNFR
SRKNIIEGVNFIFKQIMSKNVGELEYGEGEKLNYGADFKEVEEDKEVERSIEIHLMDKEE
NIEVYSEELGLDEEENIDNIQLEARMVGKIINNLIKDENDNSFMVQDKATKEYRKVQYRD
IVILMRATSAMANIFTEELNNVGIPVFADTSSGYFETIEIKTIMSLLQIVDNPRQDIPML
SVLRCPIFSFSPEDIIDVRLINRDISIYECLEKIANTELCLEEEKLYVDEINNDLKERII
SFLQKLNLWRDNSIHMSIDQFIWYLYTETGYYGYVGAMPGGIQRQANLRLLFERAKQYEN
TSYKGFFNFISFINKLKNTSGDMGSAKILGENENVVRIMSIHKSKGLEFPVVIMAGAGRG
FNFQDIRKDILFHHELGFGPEYVDLNKKIKYPTIMKKIISQKIKLETLSEEMRILYVAFT
RAKEKLIISGAVKDIEKSMREWCSIGQQSEQRIPEYEIIKSKNYLDWIMPALARHKDFQK
YIEKELPEIEMENGIEDDSSWSLRFWNKKQLLENKLEDPKERDIIKEIELNKEKNYDDLY
KDEVNRRLNWKYKYIKASEIPAKLSVSEIKSRFEILDMENSEALIEENIFLRKPQFLEKF
KKFSSAEIGTFTHLVMQHIDFQRTNSIKDIEDQIEELIKKEFLTKEQAKVINIKKIFKFT
QNPIVDRIKKSHNVKREQPFYIEMSSKELMPNISDVYKDEKILIQGVIDLYFQDGEDLII
LDYKTDYIEDIEKTKDKYYLQIEYYKKALEKITGKKVKEKYLYLFNIDRLEII
NT seq
3762 nt
NT seq
+upstream
nt +downstream
nt
atgaaatggacaaatgaacagagaaaagctatagaaactaaagattgcaaccttttagta
gctgcagcagcaggttcagggaaaacagctgtgttagtgcaaagaataatagaaaaaata
atggataaagaaaatccagtagatatagatagacttttaattgttacatttacaaaggca
gcagcatctgaaatgaaggaaagaataggagctgcaatatcagaagaattagataaaaat
ccagattcaaaaattctgcaaaggcaattgacattgctaaatagagctaatataactaca
atacattcattttgtctaaaagtaataaagaataattttcatcttatagatatagatcct
acttttagagtagcagatgaaaccgagagtatattattaaagcaagaagcattagaagag
gtttttgaaaatatttactatgaggaaaattgtacaaaagaattcaaagaattacttgat
tcatttggagggaaaagtgacaggaaacttttagaagtagttgaaagcctatataacttt
tctcaaagtctttcttggccttttaaatggttaaatgaaaaaattgaaagttttaacata
ggaaagaattatgattttagtaaatctatttgggcaactacattaaaagaaaatataaaa
atagagttaaatggtgtaaaaaatcaacttaaaagttctttaaatatattaggagaatat
aacgaggaattaatagattatatagaagtagtggagaatgaattaaaatatgtaaaagaa
ttgttggaaggtgaagaaactgacattataaaaggattattatactttgatttaggtaga
cttcctggaaagagattaaaaggagaagtaaaggatactaaagatagagcaataaaatta
agggataaagccaaagaaagtataaataaattaaaagaagatataaatttaggatatgaa
aatgtagaaaaaaatatgaaagaattatatcctagaatgaaatgtttaatagatttggtt
atgaaatttactatggaatatgataaaaggaaaagagagaaaaatataatagatttcaat
gatatagaacattttgccttagagatactaacagattttgataaagaagaaaaagtaatc
ccttcatctgtggcattagaatatagaaataaattcgaagaggtattagtggatgaatat
caagatagtaactttgttcaagaggccatattaaattccatatcaagacaggataatctt
gaagaaacaattgaagatgaaaaattaattattcctaatttgtttatggttggggatata
aaacaaagtatatacagatttagacaggcaaagcctgaattgtttttagaaaaatatgac
aattattcagaagaagaaggtaataaatatagaaagattaagttatttaaaaattttaga
agtaggaaaaatataatagaaggcgtgaattttatatttaaacagataatgagtaaaaat
gtaggagaacttgagtatggagaaggagaaaaattaaattatggagcggatttcaaagaa
gtagaagaagataaagaggtagaaagaagtatagaaatacatcttatggataaggaagaa
aatatagaagtctatagtgaagaactagggctagatgaggaagaaaatatagataatatt
cagctagaagctagaatggtaggaaagataataaataatctcataaaagatgaaaatgat
aattcttttatggtgcaagataaagctactaaagaatatagaaaagtgcaatatagagat
attgtaatacttatgagagctacatcagctatggcaaatatatttacagaagagttgaat
aatgtaggaatacctgtgtttgctgatacttcttctgggtactttgaaaccattgaaata
aaaactataatgtcattattacaaatagtagataatccaagacaggatatacctatgtta
tctgtattaaggtgtcctatattttctttttcaccagaagatattatagatgtaaggctt
ataaatagagatataagtatatatgagtgtttagaaaaaatagcaaatacagagctttgt
ttagaagaagaaaaattatatgtagatgaaataaataatgatttaaaggaaagaattata
agtttcttacaaaaattaaatttatggagagataattctattcatatgagtatagatcaa
tttatttggtatctatatacggaaaccggttattatggatatgtaggagctatgccaggt
ggcatacaaagacaggctaatttaagattgttatttgagagagcaaagcaatatgaaaat
accagttataaaggattttttaattttattagctttataaataagttgaaaaatactagt
ggagatatgggaagtgctaaaatattaggagaaaatgaaaatgtagtaagaattatgagt
atacataaaagtaaggggttagaatttcctgtagttataatggcaggagcaggtagaggc
tttaatttccaagatataagaaaggatatattatttcatcatgaactaggctttggacca
gaatatgtagatttaaataaaaaaataaagtatcctaccattatgaaaaaaataatatcc
caaaagataaaattagaaaccctatcagaggaaatgagaatattatatgtagcttttact
agggcaaaagaaaagcttataataagcggagctgtgaaagatatagaaaaatctatgaga
gaatggtgttctataggacaacaatcagaacaaaggattccagaatatgagatcattaaa
agtaaaaattaccttgattggattatgccagcattagcaagacataaagattttcaaaag
tatatagaaaaagaattacctgaaatagaaatggaaaatggcatagaagatgattcttcg
tggagcttacgattttggaacaaaaagcaattattagagaataaattagaagatccaaaa
gaaagagacataataaaagaaatagaactaaataaggaaaaaaattatgatgatttatat
aaagatgaagtaaatagaaggttaaattggaagtataaatatataaaggcttcagaaata
cctgcaaaattatctgtatcagaaataaaaagcagatttgaaatattagatatggaaaat
tcggaggctttaatagaagaaaatatttttttaagaaaaccgcaatttttagagaaattt
aaaaaattttcatcagcagaaattggaacttttacacatttggttatgcagcatatagat
tttcaaaggacaaattctataaaggatatagaagatcaaatagaggagcttataaaaaaa
gaatttttaacaaaggaacaggcaaaagtaattaatataaaaaaaatatttaagtttaca
caaaatcctatagtagatagaataaaaaaatcacataatgttaaaagagaacaaccattt
tatatagaaatgagtagcaaagaattaatgccaaatatatcagatgtatataaggatgaa
aaaatattaatacaaggtgtaatagatttatattttcaagatggagaagatttaataata
ttagactataaaacagattacatagaagatatagaaaagaccaaagataaatattattta
caaatagaatattataaaaaagctttagaaaaaataacagggaaaaaagtaaaagaaaag
tatctatatttgtttaatatagataggctagaaataatttaa
DBGET
integrated database retrieval system
