Clostridium cochlearium: SAMEA4530647_0808
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Entry
SAMEA4530647_0808 CDS
T06756
Symbol
yjcD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ccoh
Clostridium cochlearium
Pathway
ccoh03420
Nucleotide excision repair
ccoh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccoh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SAMEA4530647_0808 (yjcD)
03430 Mismatch repair
SAMEA4530647_0808 (yjcD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccoh03400
]
SAMEA4530647_0808 (yjcD)
Enzymes [BR:
ccoh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SAMEA4530647_0808 (yjcD)
DNA repair and recombination proteins [BR:
ccoh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SAMEA4530647_0808 (yjcD)
MMR (mismatch excision repair)
Other MMR factors
SAMEA4530647_0808 (yjcD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
Viral_helicase1
UvrD_C_2
DEAD
AAA_30
AAA_11
AAA_16
ResIII
AAA_22
PI3K_rbd
AAA_14
Motif
Other DBs
NCBI-ProteinID:
SNV72917
LinkDB
All DBs
Position
1:787164..789170
Genome browser
AA seq
668 aa
AA seq
DB search
MKKIRLDKYQMEAVKGEQRNLVVIAPPGSGKTFVIINRIFYLMKERGVCGKNIFAMTFTK
SAAKDMERRFLDLQGIHHCNFMHTPFFGTLHSLFYNILKAHVGHISIISEKESAFIIEKI
LKKYTNNIREELIKDILNNISKYKSKHEIDEHIDRQLFYECYDEYEKYKQYKTKLDFDDI
QIKCKELLENNEKILNQCRDKFKYLLIDEFQDCDDIQLSILNMLNRDNSIFAVGDEDQCI
YNFRGAKPEAMVEFPMYFNQGKKIFLKINYRSGKNIVKLSKNLIKINKLRNSKEIFAYNE
FDGEIKIIYSEDEKEQIKNILKEVLYNTEKKGYNFKDVAILYRRNLEALMIIDYFLRNNV
EFNLNQKYFNIYNHFICNDIISYVKLSLDNRDRYSLIRIINKPFRYISKIHIEKLREFKE
KDSCFDIMCNFNMSILQIKTMKSLEKKINRIKNLNNNKVIDYIMKDIGYEEYIKSYSKKF
KIDEEELLYIIYILKKTIEDFTSLEDFIKYIEKSKNKLLEKKENAITLSSIHSSKGMEFK
SVFIINCNDGNIPYNSNVNDLKDNIKLEEERRLFYVAITRSISNLNLCICSNIGGKYLPY
SRFLKECNLDLKDSYQIGEVVLHKYLGEGKIEKIKENKITIDFNGICRMLKLDVININGL
IQKRRQNS
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaaaaataagattagataaataccaaatggaagctgttaaaggagaacaaaggaac
ttagtggtaattgcacctccagggagtggcaaaacctttgttattataaatagaatattt
tatttaatgaaagaaagaggagtatgtggaaagaatatatttgcaatgaccttcactaaa
agcgcagctaaagatatggaaagaaggtttttggatttgcaaggaattcatcattgcaat
tttatgcatactcccttttttggaacattgcatagtttattttacaatatattaaaagct
catgttggacatataagtataatttcagaaaaggaaagtgcgtttataatagaaaaaatt
ttgaaaaaatatacaaataatataagagaagaattgattaaagatatactaaataacata
tcaaaatacaaaagcaagcatgaaatagatgagcatatagatagacagctattctatgaa
tgttatgatgaatatgaaaaatataaacagtataaaactaaattagattttgatgatata
caaataaagtgtaaagagcttttagaaaataatgaaaagatattaaatcaatgtagagat
aaatttaaatacttattaatagatgaatttcaagactgcgatgatatccaattaagtata
ttaaatatgttaaatagagataatagtatctttgcagtaggagatgaagatcagtgcata
tataattttagaggagcaaaaccagaagctatggtggaatttcctatgtattttaatcag
ggtaaaaaaatatttttaaaaatcaattacagaagtggaaagaatatagtaaaattatca
aaaaatttaattaaaattaataaactgaggaattctaaagaaatatttgcttataatgaa
tttgatggagaaataaaaataatatatagtgaagatgaaaaagaacaaataaagaatatt
ttaaaagaagtgctttataatacagagaaaaaagggtataatttcaaagacgtagctata
ctttatagaagaaatttagaagcacttatgattatagattatttcctaagaaataatgta
gagtttaatttaaatcagaaatattttaatatatataatcatttcatatgtaatgatata
ataagttatgtgaaactatcattagataatagggatagatatagtttaattaggataata
aataaaccctttagatatataagtaaaatacatatagaaaaactaagggaatttaaagaa
aaagatagttgttttgatataatgtgcaattttaatatgtcaatattgcaaataaaaact
atgaaaagtttagaaaagaaaataaatagaataaaaaatctaaataataataaagttata
gattatataatgaaagatataggatatgaagaatatataaaaagttattcaaaaaaattt
aaaatagacgaagaagaacttttatatataatttatattttgaaaaaaactatagaagat
tttacttctttggaggattttataaaatacatagaaaaaagcaaaaataaacttttagag
aaaaaggaaaatgctataactcttagtagtattcacagctctaaaggtatggaatttaaa
agtgtatttataataaactgtaatgatgggaatataccttataatagcaatgtgaatgat
ttaaaagataatattaaattagaagaagaaagacgattattttatgttgctataacaaga
agtatctctaatttgaatttatgtatatgtagcaatataggaggcaaatatttgccttat
tcaagatttttaaaggaatgtaatttggacttaaaggatagttaccagataggtgaagtt
gttttacataagtatttgggagaaggaaaaattgaaaaaataaaagaaaataagataact
atagattttaatggaatatgtagaatgcttaaattagatgtaataaatataaatggatta
attcaaaagaggagacaaaactcttaa
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