KEGG   Clostridium cochlearium: SAMEA4530647_0904
Entry
SAMEA4530647_0904 CDS       T06756                                 
Symbol
hsdR_1
Name
(GenBank) type I site-specific deoxyribonuclease, HsdR family
  KO
K01153  type I restriction enzyme, R subunit [EC:3.1.21.3]
Organism
ccoh  Clostridium cochlearium
Brite
KEGG Orthology (KO) [BR:ccoh00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:ccoh02048]
    SAMEA4530647_0904 (hsdR_1)
Enzymes [BR:ccoh01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     SAMEA4530647_0904 (hsdR_1)
Prokaryotic defense system [BR:ccoh02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   SAMEA4530647_0904 (hsdR_1)
SSDB
Motif
Pfam: EcoR124_C T1R_D3-like SWI2_SNF2 HSDR_N ResIII DEAD
Other DBs
NCBI-ProteinID: SNV73983
LinkDB
Position
1:complement(886758..889859)
AA seq 1033 aa
MSIYNIVASTDEATVVAEYAAEYNVRPEKYQSEAELEREFIKQLTSQGYEYISVHNEAAL
IENLRKQLELLNDFTFTDSEWDRFFTECIANTNEGIVEKTRKIQDDHIQILKREDGTTKN
IYLLDKKNIHNNRLQVINQYEEASGKHETRYDVTILVNGLPLVHVELKRRGVAIREAFNQ
IKRYQRDSFWAASGLFEYVQIFVISNGTHTKYYSNTTRNAHIKEQSSSERRRSKKTSNSF
EFTSFWADANNKIIPDLVDFTKTFFAKHTLLNILTKYCIFTSEDLLLVMRPYQIAAAERI
LSRIVVSTNYKKMGTTAAGGYIWHTTGSGKTLTSFKTAQLASALPYIDKVLFVVDRKDLD
YQTMKEYDRFEKGAANGNTSTRVLQRQLEDRDEKGNPHEYKIIVTTIQKLDIFIRKNKQH
DIYKKHVVLIFDECHRSQFGEMHQAITKSFKNYHIFGFTGTPIFAANASSGGNPLLRTTE
QAFGEKLHTYTIVDAINDGNVLPFRIDFINTIKMPDYVNDKKVYSIDREKALADPQRISE
IVSYVLEHFDQKTKRNSYYTFSAKWEEADKHNPKKMIEKRETRRVAGFNSIFAAASIPMA
IRYYNEFKKQIAEKNRNLTIATIFSFSANEEEPDGLLPEEDFNMENLDQSSRDFLDAAIR
DYNSTFNTNYDTSSDKFQNYYKDLSLRVKNREIDILIVVNMFLTGFDATTLNTLWVDKNL
RQHGLIQAFSRTNRILNSVKTYGNIVCFRDLKEETDKAIALFGNKDAGGIVLLKTFDEYY
KGYDEKGEHKPGYAELIATLTTQYPLGQPILGEEAEKEFIRLYGAILRLRNILTSFDDFE
GNEILSERDFQDYQSIYIDLYQEYRKGADGDKETINDDIVFEIELVKQIEVNIDYILMLV
AKYQQSNCKDKTILTTIDKAINSSIELRSKKELIERFIEQVNVSTKVDEDWRKFLHERKE
ADISAIIEEEKLKPEETRRFIDNAFRDGMLKTTGTAIDKIMPPVSRFGGGRAAKKQGIIE
KLMLFFEKYLGLI
NT seq 3102 nt   +upstreamnt  +downstreamnt
atgagtatatacaatatcgttgcaagtactgacgaagcaacggttgttgccgaatacgca
gctgaatataatgtccgtcctgaaaagtatcagagcgaggcagaacttgagcgggagttt
attaagcaactgacttcccaaggatatgaatatatttcagtgcacaatgaagctgcattg
atagaaaatctccgaaaacaacttgaactgcttaatgattttacatttactgatagcgaa
tgggatagatttttcacagaatgtattgccaatacaaatgagggtattgttgaaaaaacc
agaaaaattcaggatgaccatatccagattctaaaacgtgaagatggaacaacaaagaac
atataccttttggataaaaagaatatccataacaatcgtttgcaggttattaatcaatac
gaagaagcgagtggcaagcatgaaacccgatatgatgtaacaatccttgtaaatggactt
ccactagttcatgtagagttaaagcgtcgtggtgttgctatccgtgaagctttcaaccag
ataaaaagataccaacgtgacagcttttgggcggcttctggtttatttgagtatgtgcaa
atattcgtaatctcaaatggcacccatacaaagtattatagcaacaccacaagaaatgct
catatcaaggagcaaagcagcagtgaacgtcgaagaagcaaaaaaacaagcaacagcttt
gaatttaccagcttttgggcagatgcaaacaacaaaattattcctgatcttgtggacttt
actaaaacattttttgccaagcataccctcttaaatatactaacaaaatattgtatcttt
acatctgaggatctgctccttgtaatgcgtccttatcaaatagctgctgcagaacgtata
ttatcacgtattgtagtatcaacaaactacaagaagatgggcacaactgcagctggagga
tatatttggcatacaacaggctctggtaagacattgaccagttttaagacagctcaatta
gcttctgccttgccttacatagacaaggtactgtttgtcgttgaccgtaaagatctggat
tatcagaccatgaaggaatatgaccgttttgaaaagggagctgctaatggtaatacgtcc
acaagagttcttcaaagacaattggaagacagggatgaaaaaggaaatcctcatgaatac
aaaatcattgtaaccactattcagaagttggatatatttatacgtaaaaataaacagcat
gatatttataagaaacacgtggtactgatttttgatgagtgccaccgttcccaatttggc
gaaatgcatcaagctatcacgaagagttttaagaactaccatatcttcggctttacggga
actccgatttttgctgctaatgccagttcaggaggtaacccattgcttcgtacaaccgag
caggcctttggagaaaagctacatacctataccattgtagatgccatcaatgatgggaat
gttctgccttttagaatagattttatcaataccattaagatgcctgattacgttaatgat
aaaaaagtctatagcatagatagagaaaaagccttagcagatccacagcgaatcagtgaa
attgtttcttatgttcttgaacactttgatcaaaagacgaagcgcaatagttattacaca
ttctctgcgaaatgggaagaagcagataagcacaaccctaaaaagatgatagaaaagcgt
gaaacaaggcgagttgccggtttcaactccatatttgctgctgcatccatcccaatggca
atcagatactataatgagtttaagaagcagatagcggaaaagaaccgtaaccttaccatt
gcaactattttcagttttagtgcaaatgaagaagagccagatggattgcttcctgaagag
gattttaatatggaaaaccttgaccagagctccagagattttcttgatgcggctatccga
gattacaattccacatttaacacgaattacgatacttcctcggataagttccagaattat
tataaagacctctctcttcgtgtaaagaatcgggagattgatatattgattgttgttaat
atgtttcttacaggctttgatgcaacaaccctaaatacgctatgggtagataaaaacctg
agacagcatggactgattcaggctttttcaagaactaaccgcatcctaaacagcgttaag
acctatggtaatatcgtttgctttagagatttgaaagaagaaacagacaaagctattgca
ctattcggcaataaggatgcaggcggtattgtactgctaaaaacattcgatgaatattat
aagggatatgatgaaaaaggtgaacacaagccgggctatgctgaattgattgcaaccctt
acaacacagtatccccttggacaacctattctcggagaagaagctgaaaaagaatttatc
aggttatatggagcaatactcaggctcagaaatattcttacttctttcgatgactttgaa
ggaaatgagattttatctgaaagggattttcaggactatcagagcatttatattgacctg
tatcaggaatatagaaaaggtgctgatggtgacaaagaaactatcaatgatgacatagtt
ttcgagattgaactggtcaaacagatagaggtaaatattgactacatccttatgcttgta
gccaaatatcaacaatccaactgtaaggataaaaccattcttacaactattgataaggct
atcaattcaagtattgaacttcgaagtaagaaagagcttatcgagcgttttatagagcaa
gtcaatgtatcgaccaaagtggatgaggattggcgcaaattcctccatgagcgtaaggaa
gcggatatttcagcaattatagaagaagaaaaattaaagcctgaagaaacccgccgtttc
atcgacaatgctttccgagatggaatgcttaagacgaccggtacagccattgataaaatc
atgccacctgtatcccgctttggcggaggcagagccgcgaaaaagcaaggaattatcgaa
aaactaatgttattctttgagaagtatttaggattgatatag

DBGET integrated database retrieval system