Clostridium cochlearium: SAMEA4530647_1076
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Entry
SAMEA4530647_1076 CDS
T06756
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ccoh
Clostridium cochlearium
Brite
KEGG Orthology (KO) [BR:
ccoh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccoh03032
]
SAMEA4530647_1076 (topA)
03400 DNA repair and recombination proteins [BR:
ccoh03400
]
SAMEA4530647_1076 (topA)
Enzymes [BR:
ccoh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
SAMEA4530647_1076 (topA)
DNA replication proteins [BR:
ccoh03032
]
Prokaryotic type
DNA Topoisomerases
SAMEA4530647_1076 (topA)
DNA repair and recombination proteins [BR:
ccoh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SAMEA4530647_1076 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_recom
Toprim_4
Zn_ribbon_GRF
CpXC
BRCA2
ADK_lid
Motif
Other DBs
NCBI-ProteinID:
SNV75676
LinkDB
All DBs
Position
1:1063007..1065094
Genome browser
AA seq
695 aa
AA seq
DB search
MGQKLIIVESPAKAKTIGKYLDKTYHVEASMGHIRDLPKSQLGVDIDNNYEPKYITIRGK
GELLTKIKKQAKKCDKVYLATDPDREGEAISWHLSKALKLEEDKKCRIVFNEITKTAVKN
AIKEPREIDIDLVNAQQARRVLDRLVGYKISPILWKKVRWGLSAGRVQSVALKMICDREK
EIEEFIPKEYWSIECKLNKDKKDFLVKLISKNNKKIEINTKEESDNIIKELKKGKFIVHK
IKKTTKNKNPLPPFITSTLQQDAYRKLNFSTKKTMSIAQQLYEGIDIKGYGTIGLITYMR
TDSVRISKEAQDKARQFLENAYGKEYIPENPRNYKGKKNIQDAHEAIRPTNIGITPKIAL
ENLNSDQYKLYSLIWNRFMASQMAACVMEVNSVDVENSGYIFRATGSIVKFDGFMIIYEY
LSEDEKENINIPKLEKGEVLKEKSIDGKQHFTQPPGRFSEASLVKVLEDNGIGRPSTYAP
IISTLLERTYIERENRTLRSTELGVIVNNIMTEYFKPVVDAEFTAEMENKLDSIEEGSSE
WKSVVDEFFSPLKELIETAEKEVEKVVLEEKVTDVKCEKCGKNMVVKHGRYGDFLACPGY
PECKNTKPIVHQLDVKCPKCNGEIVLKKSKKGRKFYGCSNYPECDFISWFEPVENKCDVC
GSYMVKRYTKSKGDYIECSNKECKHKIMQEKKQDE
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgggacaaaaacttatcattgtggaatcgccagcaaaagcaaaaaccattggaaaatat
ttagataaaacttatcatgttgaagcatccatgggacatataagagatcttcccaaaagt
caattgggagttgatatagataataattatgaacctaaatatataaccattagaggaaaa
ggtgaacttttaaccaaaataaaaaaacaggctaaaaaatgtgataaggtttatctggct
acagaccctgatagagaaggggaagctatttcttggcatttatctaaagcattaaaatta
gaagaggataagaaatgtagaatagtatttaatgaaataactaaaactgcagtaaaaaat
gctataaaagaacctagagaaattgatatagatttagtaaatgctcagcaagctagaagg
gtattggatagacttgttggatataaaataagtcctatcctatggaaaaaagtaagatgg
ggtctaagtgcaggtagagttcaatccgttgcattaaagatgatatgcgatagagagaaa
gaaatagaagaatttattcctaaagaatattggagtattgaatgtaaactaaataaagat
aaaaaggattttttagttaaattaatatcaaagaataataaaaaaattgaaataaataca
aaagaagaaagcgataatataattaaggaacttaaaaaaggtaaatttattgttcataag
atcaaaaagacaaccaaaaataaaaatccattaccaccatttataacaagtactttacaa
caagatgcctataggaaattaaatttttcaacaaagaaaactatgtccattgcgcaacaa
ctttatgaaggaattgatataaagggatatggaactataggtcttataacttatatgaga
acagattctgttagaatatctaaagaggcacaggataaggctagacaatttttagaaaat
gcatatggaaaagagtatataccagaaaatcctagaaattataaaggtaaaaaaaatatc
caagatgcccatgaagctataaggcctacaaatataggaataacacctaaaattgctttg
gaaaatttaaattcagatcaatataaactatattctttaatttggaatagatttatggca
agtcaaatggcagcttgtgtaatggaagttaattctgtagatgtagaaaatagcggatac
atatttagagctacaggatcaattgttaaatttgacggttttatgataatttatgaatat
ttaagtgaagatgaaaaggaaaatataaatattcctaaattagagaaaggagaagttctt
aaagagaaatctatagatggaaaacagcattttacacaaccaccaggaagattttcggag
gcatctttagttaaggttttagaagataatgggataggaagaccaagtacttatgcccca
attatatctactttattagaaagaacctatatagaaagagaaaataggactttacgctcc
acagaattaggagtgatagtgaataatattatgacggaatattttaaaccagtagtagat
gctgaatttacagcagaaatggaaaataaattggacagtattgaagaaggaagttcagaa
tggaaaagtgtagtagatgaattttttagtccattaaaagaacttatagagactgcggaa
aaagaagttgaaaaagttgtattagaagaaaaagttacagatgtaaagtgtgaaaagtgt
ggtaagaacatggtggttaaacatggaagatatggtgactttttagcttgccctggatat
ccagaatgtaaaaatactaaacctatagtacatcaattagatgtaaaatgtcctaaatgc
aatggagaaatagtactaaaaaagagtaaaaagggaagaaaattttatggatgtagtaat
tatccagaatgtgattttataagttggtttgaaccagtagagaataaatgtgatgtttgt
ggtagttatatggtaaaaagatatactaaatccaaaggagattatattgagtgttcaaat
aaggaatgtaaacacaaaattatgcaagaaaaaaaacaagacgaatag
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