Clostridium cochlearium: SAMEA4530647_1088
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Entry
SAMEA4530647_1088 CDS
T06756
Symbol
polC_1
Name
(GenBank) DNA polymerase III PolC
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
ccoh
Clostridium cochlearium
Pathway
ccoh03030
DNA replication
ccoh03430
Mismatch repair
ccoh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ccoh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SAMEA4530647_1088 (polC_1)
03430 Mismatch repair
SAMEA4530647_1088 (polC_1)
03440 Homologous recombination
SAMEA4530647_1088 (polC_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccoh03032
]
SAMEA4530647_1088 (polC_1)
03400 DNA repair and recombination proteins [BR:
ccoh03400
]
SAMEA4530647_1088 (polC_1)
Enzymes [BR:
ccoh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SAMEA4530647_1088 (polC_1)
DNA replication proteins [BR:
ccoh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SAMEA4530647_1088 (polC_1)
DNA repair and recombination proteins [BR:
ccoh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SAMEA4530647_1088 (polC_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
PHP
DNA_pol3_a_NII
tRNA_anti-codon
RNase_H_2
DEDDh_C
Motif
Other DBs
NCBI-ProteinID:
SNV75897
LinkDB
All DBs
Position
1:1075561..1077372
Genome browser
AA seq
603 aa
AA seq
DB search
MELAKILEENTFSQDSLYGIRVHRIQYFKKANKLKVIVKSKEEVNKNQINEIKKAFFDEF
KYFNEIEVICYRDISGIKLKDICEKYWIDIINGVLTYIPFCKECLVNSKKEVIDENTLEL
KYGNDFLYNILKEKKFEKVLSNTIKDIFGVNCKINFILDHSYEKCNYLDIKEEQEALIVK
NIIKESRIEKTNSKKENNHNKKVENKNSSIIVGKNINEEPVDISTIDETSGIIAICGDIF
KTKIIETKTGRKIVTFYITDYTSSITVKLFPRPKDAERIIEEIKEGLYCKIRGEVVNDSY
AREIVIMARDIVKLNKIEKMDMAKEKRVELHLHTKMSAMDGMNSAESLVKRAAKWGHKAV
AITDHGVVQAYPEAMEAAKKYNIKIIYGVEGYLVDDGVPIAINAGNRTLDDTYVVFDIET
TGFSNKNDKIIEIGAVKIKEGKIIDKYSTFVNPERIIPEKIVELTGIQDYMVKDAPKIEE
VLPEFMEFVADSILVAHNANFDVSFIKKNCKDMGINFNSPILDTIPLCKFLYPELKRYKL
NIVAKHLGIPLLNHHRAVEDAKTTGDILLRAFEDLKDKEIFTLNRLNEEYFKNQDIKNYL
LIM
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atggaattagctaaaatattagaagaaaatactttttcacaggatagcttatatggtata
agagtacacagaatacagtattttaaaaaggctaataaattaaaagttatagtaaaatca
aaagaagaagtaaataagaatcagataaatgaaataaaaaaggcattctttgatgaattt
aaatactttaatgaaatagaagtaatttgctatagagatatatcaggaattaaattaaaa
gatatatgtgaaaaatactggatagatataataaatggggtacttacttatatacctttt
tgtaaagaatgcttagtaaattcaaaaaaggaagtaatagatgaaaatactttagaatta
aagtatggaaatgattttttatataatattttaaaagaaaaaaaatttgaaaaggtattg
tcaaataccataaaagatatttttggagtaaattgtaaaattaattttatactagatcat
tcttatgaaaaatgtaattatttagatattaaagaagaacaggaagctttaattgtaaaa
aatattataaaagaaagtagaattgaaaagactaattctaaaaaagaaaataaccataat
aaaaaagtagagaataaaaatagtagtataattgtagggaaaaatataaatgaagaacca
gtagacatatctactatagatgaaacttcaggaattattgctatttgtggagatatattc
aaaacaaagataatagaaactaaaactggaagaaaaatagtaacattttatataacagac
tatacaagttctataactgttaaactatttccaagacctaaagatgcggaaaggattata
gaggaaataaaagaggggctatattgcaaaataagaggagaggtagtaaatgattcttat
gctagagaaatagttataatggcaagggacatagtaaaattaaataaaatcgaaaaaatg
gatatggctaaagaaaaaagagtggaacttcatttgcatactaaaatgagtgccatggat
ggtatgaattctgcagaaagtttggtaaaaagagcagctaaatggggacacaaagcggtg
gctattacagatcatggtgtagttcaggcctatccagaagcaatggaggctgctaaaaaa
tacaatataaaaataatatatggagtagaaggatatttagtagatgatggggtgcctata
gctataaatgcaggcaatagaacattagatgatacttatgtggtttttgatattgaaact
acgggcttttctaacaaaaatgataaaataatagaaataggtgctgtaaaaataaaagaa
ggcaaaataatagataaatatagtacttttgtaaacccagaaagaattattccagaaaaa
atagtggaacttactgggatacaggattatatggtaaaggatgctcctaaaatagaagaa
gttttaccagaatttatggaatttgtcgcagattctatattagtagctcataatgcaaat
tttgatgtatcttttataaaaaagaactgtaaagatatgggcataaattttaacagccca
atattggatacaattcctctttgtaaatttttatatcctgaactaaaaagatataaacta
aatatagtagcaaaacatttaggaataccacttttgaatcatcatagagcagtagaagat
gctaaaactacaggggatatacttttaagggcatttgaggatttgaaagataaagaaata
tttaccttaaatagactaaatgaagaatactttaaaaatcaagatataaaaaattaccta
cttatcatgtaa
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