Clostridium cochlearium: SAMEA4530647_1100
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Entry
SAMEA4530647_1100 CDS
T06756
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ccoh
Clostridium cochlearium
Pathway
ccoh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccoh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAMEA4530647_1100 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccoh03019
]
SAMEA4530647_1100 (pnp)
03016 Transfer RNA biogenesis [BR:
ccoh03016
]
SAMEA4530647_1100 (pnp)
Enzymes [BR:
ccoh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SAMEA4530647_1100 (pnp)
Messenger RNA biogenesis [BR:
ccoh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SAMEA4530647_1100 (pnp)
Transfer RNA biogenesis [BR:
ccoh03016
]
Prokaryotic type
tRNA degradation factors
SAMEA4530647_1100 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
KH-I_KHDC4-BBP
KH_2
Motif
Other DBs
NCBI-ProteinID:
SNV75996
LinkDB
All DBs
Position
1:1088004..1090121
Genome browser
AA seq
705 aa
AA seq
DB search
MSHVLETDIAGRTLKVEYGKVGMLSDCAILVSYGDTVVLINANASKEPRDGIDFFPLSVE
YEERLYSVGKIPGGFIKREGRPTENAILHARAIDRPLRPLFPKGYRNDVQIVCTVLSVES
DNQPDILAMNGASLALCLSSIPFTTPVANVSVGLINDEFILNPTQSQREESILNLTVSAT
KERVMMIEAGAQEIDEDTMYRAIRFGFEKCQKIIEFQEEAMRKFGKEKVEPVLYLVDEEI
EKEVREFAFPMIKEAMYIPDKDLRNEKIDEVKEKVMEEFEEKYPDNISDISEAIYKMQKE
VVRNMILREKRRPDERAFNEIRKISCEVGLLPRTHGTGLFTRGLTQVMTAATIGPLADVQ
ILDSIEDEEFKRYMHHYNFPSYSVGETRPLRGPGRREIGHGALAEKALEPLIPSEEEFPY
TIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLVTSDDLTEEEILTDI
QGIEDFFGDMDFKVAGTEKGITAIQVDTKISGLSDNCIKQALVKARDARLYILGKIKECI
PEPRKELSPYAPRVYTMSIDPEKIRDVIGAGGKTINKIIGETGVQIDIKEDGKIYVMSPD
SVGADRALKMIDDLTRDVEAGEIYLGKVTRTTNFGAFVEILPGKEGLVHISKLDFTRVNK
VEDVVSVGDEILVKVTDIDDQGRINLSRRDAMKKEENEKDKENKH
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgagtcacgtacttgaaactgatatagcaggaagaactcttaaagtagaatatggaaaa
gttggaatgctttctgattgtgctatattagtaagttatggagatacagtggttcttata
aatgcaaatgcatctaaagaaccaagagatggaatagatttttttccattaagtgtagaa
tatgaagaaagactttattctgttgggaaaataccaggaggctttataaaaagagaggga
agacctacagaaaatgctatattacatgctagggctatagatagaccattaagaccttta
tttccaaaaggttatagaaatgatgttcaaatagtatgtactgtattgtctgtggaatct
gataatcaaccagatatattagctatgaatggagcatctttagctctatgcctatctagc
ataccttttaccactccggtagctaatgtttccgtaggtttaataaatgatgaattcata
ttaaatccaactcaaagtcaaagagaagagagcattttaaatttaactgtttccgctaca
aaggaaagagttatgatgattgaagcaggtgcccaagaaatagatgaagatacaatgtat
agggctataagatttggttttgagaaatgccaaaagataatagaatttcaagaagaagca
atgagaaagtttggaaaagagaaggtagaaccagtattatatttagtagacgaagaaata
gaaaaagaagtaagagaatttgcatttcctatgattaaagaagctatgtatattccagat
aaagatcttagaaacgaaaaaatagatgaagtaaaagaaaaagtaatggaagaatttgaa
gaaaaatatccagataatatttcagatatttcagaagctatatacaaaatgcaaaaagaa
gtagtaaggaatatgatacttagagaaaaaagacgtccagatgaaagagcttttaatgaa
ataagaaaaattagctgtgaagtgggattacttccaagaactcatggtacaggattgttt
actagaggattaactcaagtaatgacagctgcaactattggacctttagcagatgtacaa
atcctagatagtatagaagatgaagaattcaaaagatatatgcatcattataattttcca
tcttatagtgtaggagaaactagacctttaagaggaccaggtagaagagaaataggtcat
ggagctttagcggagaaagcattagaacctttaataccatctgaggaagaattcccatat
actataagacttgtatctgaggttttaagttcaaatgggtctacttctcaagcaagtgtt
tgtggaagtacattagctctattagatgcaggagtacctattaaaagacctgcagcaggt
atagctatgggacttgttactagcgatgatttaacagaagaagaaattttaactgatata
caaggtatagaagatttctttggagacatggactttaaagtagcaggcacagaaaaggga
ataactgctatacaagtagacacaaagataagtggactatcagataattgtataaaacaa
gctttagtaaaagcaagagatgcaagattatatatattaggaaagattaaagaatgcata
ccagagcctagaaaagaactttcaccttatgctccaagagtttatactatgagtatagac
ccagaaaaaataagagatgtaataggtgccggtggtaaaacaataaacaaaataatagga
gaaactggtgttcaaatagacataaaagaagatggaaaaatatatgttatgtctcctgat
agtgttggagcagatagagcactaaaaatgatagatgatttaactagagatgtagaagca
ggagaaatttatttaggtaaagttactagaacaactaattttggagcttttgttgaaata
cttccaggaaaagaaggactagtacacatttccaaattagactttacaagagttaataaa
gttgaagatgtagtttcagttggagatgaaatattagtaaaagtaacagatatagatgat
caaggaagaataaatctttcaagaagagatgcaatgaagaaagaagaaaacgaaaaagat
aaagaaaataaacattaa
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