Clostridium cochlearium: SAMEA4530647_1109
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Entry
SAMEA4530647_1109 CDS
T06756
Symbol
rny
Name
(GenBank) phosphodiesterase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
ccoh
Clostridium cochlearium
Pathway
ccoh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccoh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAMEA4530647_1109 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccoh03019
]
SAMEA4530647_1109 (rny)
Messenger RNA biogenesis [BR:
ccoh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SAMEA4530647_1109 (rny)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
OmpH
KH_2
Motif
Other DBs
NCBI-ProteinID:
SNV76058
LinkDB
All DBs
Position
1:1100082..1101623
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AA seq
513 aa
AA seq
DB search
MNLAYYIVATIIVAVIAIYVDYYIRKNVSAAKISNAEEKGRNIIEDAKREAESKKKEAIL
EAKEEMHRLRNDFEKESRDRRNEIQRLERRLIQREETLDKKGDMLEKKEESLNKKQQELE
NKRNNIENLYEKQREELEKLSGLTSEQAKEMLLEEVRKEIKHETAMLIKEVETKAKEEAD
KKAREITTYAIQRCAADHVAETTVYVVNLPNDEMKGRIIGREGRNIRTLETLTGVDLIID
DTPEAVILSAFDPVRREVARIALEKLIMDGRIHPARIEEMVEKAKKEVETNIREEGEQAT
FETSVHGLHSELIKLLGRLKYRTSYGQNVLKHSIEVSYLAGLMASELGMDPTLAKRAGLL
HDIGKAVDHEMEGPHAIIGAEVAKKHHESSIVVNAIAAHHGDEEFESIEAILVQAADAIS
AARPGARRETLEAYIKRLEKLEEIANSYEGVEKSYAIQAGRELRIIVKPEVVDDAGSYEM
ARNIVKTIENELEYPGQIKVNVIRETRSIEYAK
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
ttgaacttagcgtattatatagtagcgactattatagtagcagttatagctatatatgtt
gattattatatcagaaaaaatgtatctgcagctaaaatttcaaatgcagaagaaaaagga
cgtaatataatagaagatgctaaaagagaggctgaatctaaaaagaaagaagccatactt
gaagcaaaagaagagatgcatagactcagaaatgattttgaaaaagagtctagagacaga
agaaatgaaatccaaagattagaaagaagattaatacaaagagaagaaacacttgataaa
aaaggtgacatgttagaaaagaaggaagaaagcttaaataagaaacaacaagaattagag
aataaacgaaataatatagaaaatttatatgaaaaacaaagggaagaactagaaaagctt
tctggattaacttcagaacaagctaaagaaatgctattagaagaagtaagaaaagaaatt
aaacatgaaaccgcaatgttaattaaagaggtagaaacaaaagccaaagaagaggctgat
aaaaaggcaagagaaataactacatatgctattcaaagatgtgcagcagatcatgttgca
gaaaccacagtttatgtagtaaatcttcctaatgatgaaatgaaaggaagaattatagga
agagaaggtagaaatataagaacgcttgaaactttaacaggtgtggatttaataatagac
gatacacctgaagcagttattctttcagcgtttgatcctgtaaggagagaagttgctaga
atagctctagagaaactaattatggatggaagaattcatccagccagaattgaagaaatg
gtggaaaaagccaaaaaagaagttgaaactaatattagagaagaaggagaacaggctact
tttgaaacaagtgtacatggacttcattcagaactaataaaactattaggtaggttaaaa
tatagaactagttatggtcaaaatgttttgaaacattctatagaagtatcttacttagca
ggcttaatggcttcagaattgggaatggatcctactttagctaagcgagcaggattactt
cacgatataggaaaggctgttgaccatgaaatggaaggaccacatgctattataggagcc
gaagtggctaaaaagcatcatgagtcatccatagttgtaaatgcaatagctgcccatcat
ggagatgaagaatttgaatctatagaagcaatattagttcaggctgcagatgctatttca
gctgcacgacctggagcaagaagagaaactttagaagcttatattaaaagattagaaaaa
cttgaagagattgcaaattcatatgaaggcgtagaaaagtcatatgccattcaagcgggt
agagagttacgaataatagttaaaccagaagtagtagatgatgcagggtcttatgaaatg
gctaggaacatagttaaaaccatagaaaatgaattagaataccctggtcaaattaaagta
aatgtaattagggaaactcgttccatcgagtatgctaaataa
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