Clostridium cochlearium: SAMEA4530647_1193
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Entry
SAMEA4530647_1193 CDS
T06756
Symbol
pcrA_1
Name
(GenBank) ATP-dependent DNA helicase UvrD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ccoh
Clostridium cochlearium
Pathway
ccoh03420
Nucleotide excision repair
ccoh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccoh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SAMEA4530647_1193 (pcrA_1)
03430 Mismatch repair
SAMEA4530647_1193 (pcrA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccoh03400
]
SAMEA4530647_1193 (pcrA_1)
Enzymes [BR:
ccoh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SAMEA4530647_1193 (pcrA_1)
DNA repair and recombination proteins [BR:
ccoh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SAMEA4530647_1193 (pcrA_1)
MMR (mismatch excision repair)
Other MMR factors
SAMEA4530647_1193 (pcrA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
Viral_helicase1
UvrD_C_2
AAA_11
Motif
Other DBs
NCBI-ProteinID:
SNV76693
LinkDB
All DBs
Position
1:complement(1184153..1185943)
Genome browser
AA seq
596 aa
AA seq
DB search
MIARNNIECITSDCALEDIDVNFKIIAGPGGGKTYWLVRHIRNVLKNSTKILSASKIACI
TYTNVAVDEIWERLEIMENKVEVSTIHSFLYKNIVKPYIYLLKDSTGKSLVNYKEMDGHD
DHIPSSGKINIWKKENNLYGIITDDKKLNDCLKSLDWIFEEEEIVLTTKDVYKRKVGKYF
IKEEYFPSYKQLYWNEGTIHHEDVLYFSYLLLENHPIILKFLRARYPYVFIDEFQDTNPI
QTRIIKLLADSGVVVGVIGDPAQSIYKFAGAERQDFLDFELPKQKNYYMNSNRRSTNKII
DFLNYLRGEDQFHQNYHRNVIGNDICLIIGKTPLEIINKFKLKRQLLELNDRCCFLTRKN
EQVTKLKACINNYNYNYEIWEELYFLDYKRYEFLNYIFVAQGYAIDTRYEMAVKEVLKIF
KTNQEGYLKEPFKNSKINNKLFKRSYALELLEFLINNYEMHLDKNLYQFYNEELYNFFIK
FDFHLKRLTGKGKFKVKSEKVTVKELVNSLNIREVRNDNIRTIHKAKGTEFESVLVYFDD
INEIDAIINPDIDSEEDDYRLYYVAFSRAEDFLCIATKSIDDEQEKKLRQLNIRIL
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atgatagcaaggaataatattgaatgtataacatcagactgtgccttggaagatatagat
gtaaattttaaaataatagctggaccaggtggaggaaaaacatattggttagtaagacat
attaggaatgtattaaaaaattcaacaaaaattttaagtgcatcaaaaatagcatgcata
acctatacaaatgtggctgtagatgagatatgggaaagacttgaaataatggaaaacaaa
gtagaagtatcaactatacacagttttttatataagaatatagtaaaaccttatatttat
ttattaaaagatagtacaggaaagtcattggtaaattataaggaaatggatggtcatgat
gatcatatacccagtagtgggaaaataaacatttggaaaaaagaaaataatctttatggt
ataataacagatgacaagaaattaaatgattgtttaaaaagtttggattggatatttgaa
gaggaagaaatagtactaacaacaaaagatgtctataaaagaaaggtaggaaaatacttc
attaaagaagagtattttccatcatataaacagctatattggaatgaaggaacaatacat
catgaggatgttttatatttttcgtatctattattagaaaatcatccaataattttaaaa
tttcttcgagcaagatatccatatgtttttatagatgaatttcaggatacaaatccaatc
caaacgaggataattaaattattagctgattcgggtgtagtagttggtgtaataggagac
ccagcgcaatcaatttataagtttgctggtgccgaaaggcaagattttttagattttgaa
ctacctaagcaaaagaattattatatgaatagcaatagaaggagtactaataagattatt
gatttcctaaactatttaagaggtgaagatcaatttcatcaaaattatcatagaaatgtt
attgggaatgatatttgcctaataatagggaaaactcctttagaaatcataaataaattt
aaattaaaaaggcaacttttagaattaaatgatagatgctgctttttaacaagaaaaaat
gaacaagtaactaaacttaaagcttgtatcaataactataattataattatgaaatttgg
gaagaattatattttttagactataaaagatatgaatttttaaattacatatttgttgca
caaggatatgcaattgatacaagatatgaaatggctgtaaaagaagttttaaaaatattc
aaaacaaatcaagaaggatatctaaaagaaccttttaaaaattcaaagataaataataag
ttgtttaaaaggagttatgcattggaattattggaatttcttataaacaattatgagatg
cacttggacaagaatctatatcaattttataatgaagaactatataattttttcattaag
tttgattttcatcttaagaggttaacgggaaaaggtaaattcaaggtaaaatcagagaaa
gtaacggtaaaagaattagtaaatagcttaaatataagagaagttagaaatgataatatc
agaacgatacataaggcaaagggaacagaatttgaatcagtgttagtttattttgatgat
attaatgaaatagatgcaataataaatcctgatattgatagcgaggaagatgattatagg
ttatactatgtagcatttagtagagctgaagattttttatgtattgctactaagtctata
gatgacgaacaagagaagaaactaagacaattaaatataaggatattgtga
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