Clostridium cochlearium: SAMEA4530647_1313
Help
Entry
SAMEA4530647_1313 CDS
T06756
Symbol
uvrD
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ccoh
Clostridium cochlearium
Pathway
ccoh03420
Nucleotide excision repair
ccoh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccoh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SAMEA4530647_1313 (uvrD)
03430 Mismatch repair
SAMEA4530647_1313 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccoh03400
]
SAMEA4530647_1313 (uvrD)
Enzymes [BR:
ccoh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SAMEA4530647_1313 (uvrD)
DNA repair and recombination proteins [BR:
ccoh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SAMEA4530647_1313 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
SAMEA4530647_1313 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
AAA_30
AAA_22
AAA_11
DEAD
ResIII
Motif
Other DBs
NCBI-ProteinID:
SNV79177
LinkDB
All DBs
Position
1:complement(1294160..1295881)
Genome browser
AA seq
573 aa
AA seq
DB search
MENVNMEYSAIYYYSELDIQKINNIKKLLKTGIIVNLFLNYSFEVELELNEYNEIDFLKY
AKSNGFLNIFDDLGELNYDEGLVAYDGNILNKSFYEDVCCSKENKFNNEQYEIINANTNK
NIIVTASAGTGKTTAMINRLMFLRKTVKDFIFSNTILITFTNEASIEMRERLIEILEKYY
SFTEDVTYLNMLSEVSETNISTIHSFAKSIIDEFSLNKSINEKIKITTFEDYKKLFLEEA
IDKFSKEYPDIYLNVKYFPMYDLVNKIKTIWGKLDNHSIDLNSDKIKLDFGQDENKVSFL
IEYVLRYANKKLHDIKENKLEVSDLMKRITNIELIQRINHNYKLIMVDEFQDIDNIQIKF
ITDLCKYKNLDLFSVGDEKQSIYRFRGAEYTAFKKLKEHLKYNPKQLLEFTLVQNYRTEA
ELLKDINNLFIDIDKRIFKFKYKENDYIYSKINTNKPNNIIYKSLKEDKNKVELLDKLLD
KKQPEETIAILVRSNEDALEIKSMCDIYNIPCHVETKGDFYRQGVVKDFYLMIKSLIYLK
DNRINYSLINSPYIKDTVNKKEIIERFNEEDKK
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatgtcaatatggaatattctgctatatattattactctgaattagatatacaa
aaaataaataatataaaaaagctattaaaaacaggtataatagtaaatctatttttaaat
tatagttttgaagtggaattagaacttaacgaatataatgaaatagattttttaaaatat
gctaaaagtaatggttttttaaatatatttgatgatttaggagaattaaattatgatgaa
ggtttagttgcttatgatggaaatatattaaataaaagcttttatgaagatgtatgttgt
agtaaagaaaataaatttaataatgaacaatatgaaataataaatgctaacacaaataaa
aatataattgtaactgcaagtgcaggcactggaaaaaccacagctatgataaatagatta
atgtttttaagaaaaaccgtaaaagattttatatttagcaatactatacttataactttt
acaaatgaagctagtatagaaatgagagaacgtttaatagaaatattagaaaaatattat
agttttactgaagatgtaacatatttaaacatgctatctgaagtatcggaaactaacata
agcactatacactcctttgcaaaatccattatagatgaattttctttaaataagagtata
aatgaaaaaattaaaattacaacctttgaggattataaaaaattatttttagaagaagct
atagataagttttccaaggaatatccagatatatatttaaatgtaaaatattttcctatg
tatgatttagtaaataaaataaagacgatatggggtaaattagataatcattctattgat
ttgaattcagataaaataaaattggattttgggcaagatgaaaataaagtctcttttctt
atagaatatgtattaagatatgccaataaaaaactccatgacattaaggaaaataaatta
gaagtaagtgatctaatgaagcgaattacaaatatagaattaatacaaagaataaatcat
aattataaactcattatggtagatgaatttcaagatatagataatatacaaataaaattt
ataacagatctttgtaaatataaaaatttggatttattttcagtgggagatgaaaaacaa
agtatttatagatttagaggagcagagtatacagcatttaaaaaattaaaggaacattta
aaatataatccaaaacagttattagaatttacattagtccaaaattatagaacagaagct
gagttgctaaaagatattaacaatttatttattgatatagataaaagaatttttaagttt
aagtataaagaaaatgattatatttattcaaaaataaatacgaataaacctaataatata
atatataaatcattaaaagaagataaaaacaaagttgaacttttagataaacttttagat
aaaaaacaacctgaagaaacaattgctatactagttagaagtaatgaagatgcattagaa
ataaagagtatgtgtgatatatataacataccttgtcatgtggaaacaaagggagacttt
tataggcaaggtgtagtaaaggatttttatctaatgattaaatctttaatatatctaaaa
gataatagaattaactattctttaataaattcaccttatataaaagacactgtaaataaa
aaagagataatagagagatttaatgaagaagataaaaaatag
DBGET
integrated database retrieval system
