Clostridium cochlearium: SAMEA4530647_1348
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Entry
SAMEA4530647_1348 CDS
T06756
Name
(GenBank) geranylgeranyl pyrophosphate synthase
KO
K13789
geranylgeranyl diphosphate synthase, type II [EC:
2.5.1.1
2.5.1.10
2.5.1.29
]
Organism
ccoh
Clostridium cochlearium
Pathway
ccoh00900
Terpenoid backbone biosynthesis
ccoh01100
Metabolic pathways
ccoh01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
ccoh00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
SAMEA4530647_1348
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
ccoh01006
]
SAMEA4530647_1348
Enzymes [BR:
ccoh01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.1 dimethylallyltranstransferase
SAMEA4530647_1348
2.5.1.10 (2E,6E)-farnesyl diphosphate synthase
SAMEA4530647_1348
2.5.1.29 geranylgeranyl diphosphate synthase
SAMEA4530647_1348
Prenyltransferases [BR:
ccoh01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
SAMEA4530647_1348
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
polyprenyl_synt
Motif
Other DBs
NCBI-ProteinID:
SNV79612
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All DBs
Position
1:complement(1328022..1328894)
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AA seq
290 aa
AA seq
DB search
MDLNLYKEEIDIWLEEYFKDKGTYNKSLYEAMGYSVNIGGKRIRPILALITYKIYNKEDY
KDALPMACAIEMIHTYSLIHDDLPCMDDDDLRRGKPTNHKVFGEGLAVLAGDGLLNEAFN
IVLKEGLKKGERWIKAGYEIGKASGANGMIGGQVVDVLNTNKSIDIEELDYIHEKKTAAL
ITASIMTGAILGEASEKDITVLREFGNKLGLAFQIKDDILDIESDTKKLGKTVGKDKEQN
KNTFVKFYGLEKCKSMCKDLTSSCIKLLQSIDKDTKELEEITLYLLNRDF
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
ttggatttaaatttatataaagaggaaatagatatatggttagaggagtattttaaagac
aagggaacctataacaaaagcttatatgaagctatgggttatagtgtaaatataggggga
aaaagaataagacctatattggccttaataacctataaaatatataataaagaagattat
aaagatgctcttcctatggcttgtgcaatagaaatgatacatacttattcattaatacac
gatgacctaccatgtatggatgacgatgatttaagaaggggtaagccaactaatcataag
gtttttggagaaggtttagcagttttagcaggagatggactattaaatgaagcttttaat
atagtattaaaagaaggtttaaaaaaaggtgaaagatggattaaagctggatatgaaata
ggaaaagcctctggagccaatggaatgattggaggccaggttgtagatgttttaaacaca
aataaaagtatagacattgaagaacttgattatatccatgaaaaaaagactgcggcttta
ataacagcttctataatgacaggggcaattctaggtgaagctagtgaaaaagatataact
gttttaagggaatttggtaataaattaggcttggcttttcaaataaaagatgatatctta
gatattgaaagtgatacaaaaaaattagggaaaactgtaggaaaagataaagaacaaaat
aaaaatacctttgttaaattttatggattagaaaaatgcaagagtatgtgtaaagattta
acaagtagttgcataaaattattacaaagtattgataaagacactaaagaattagaagaa
atcactttatatttattaaatagagatttttaa
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