Clostridium cochlearium: SAMEA4530647_1403
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Entry
SAMEA4530647_1403 CDS
T06756
Symbol
penA
Name
(GenBank) stage V sporulation protein D
KO
K08384
stage V sporulation protein D (sporulation-specific penicillin-binding protein)
Organism
ccoh
Clostridium cochlearium
Pathway
ccoh00550
Peptidoglycan biosynthesis
ccoh01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ccoh00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
SAMEA4530647_1403 (penA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
ccoh01011
]
SAMEA4530647_1403 (penA)
Peptidoglycan biosynthesis and degradation proteins [BR:
ccoh01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
SAMEA4530647_1403 (penA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transpeptidase
PASTA
PBP_dimer
Motif
Other DBs
NCBI-ProteinID:
SNV80380
LinkDB
All DBs
Position
1:complement(1369430..1371616)
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AA seq
728 aa
AA seq
DB search
MSKKNYRDKVLSKKRMFLVLMILAVLFTGLMGRLIFVMVYKSPDYKKAAIDQWTSEVEIS
AKRGRILDRNGNELAISANVYRIDLDLNALRSTMKTKKLTTEDVASKLAEALEMEKEDVV
KVIEKKLPNGLPYGSATLKRRIEKSMADKVKELDLWGVIVSADTKRYYPNENYLAHVLGH
TNSDGDGLAGIEMQYNSVLSGKPGKRIAELDNTRSRQLPYVISEFTKPEDGKDVVLTIDE
MIQHFCEKAATQALSDNKAKAVSIMAMNPNNGEILALVNKPDYNPNNPWVEGKTSEELQK
MWRNRAISDTFEPGSIFKVITSTAALEENLVSEEDRFYCKGSTVIGKRTVRCWKSGGHGS
QTFVEILKNSCNVGFTELGKKIGKENLYKYIRKFGFGEKTGVDVPGEALGIIKNPANISE
LDLATISFGQTNTVSIVQYLSAFNAVANGGKLIKPHFLKEIQSYDEETGVKKTEKKFEDY
NEKKILSEEKTAQLRGYLEKVISEGGGKKAFIEGYTIGGKTGTAQKVIDGKYGPQKYISS
FAGMAPAEKPQITLFVSIDEPDPSNYYAGQIAAPVAQQVFNDIFNYLSIKGNASDSEIAE
SLKKDIVIPEIRGLKKAEALKILKEQKLDYNIDEKGDYITDMNPKPGYTVKEGSKIVLYT
GKTSNYNRVVAVPDIRGYTIENASKLLNSLGLKITYSGSGLIYEQSVKEDEEVPKGTTIH
VKLEEVID
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaaaaaaaattatagggataaagtactatcaaagaaaagaatgtttttagtactt
atgatattggctgtgctatttactggtttaatgggaaggcttatatttgttatggtttat
aagtcaccagattataaaaaagcagctatagatcaatggactagtgaagtggaaatatca
gccaaaaggggaagaattttagataggaatggaaatgaactagcaataagtgcaaatgtt
tatagaatagacttagatttaaatgctttaagatctactatgaaaactaagaagcttact
actgaagatgtagcatctaagcttgcagaagctttagaaatggaaaaagaagatgtagta
aaagttatagaaaaaaaattacctaatggattgccctatgggtctgctactttaaaaaga
agaatagaaaagtctatggcagataaagtaaaggaattggatttatggggagttatagta
tctgcagatacaaaaagatactatccaaatgaaaattatttagcccatgttttaggacat
actaattcagatggagatggacttgcaggaatagaaatgcaatacaatagtgtattatca
ggaaaaccgggcaaaagaatagcagaattagataatacaaggtcaagacaattaccttat
gttatatcagaatttactaaaccagaagatggaaaagatgtggttttgaccatagatgaa
atgatacaacatttttgtgaaaaagcagctactcaagcattaagcgataataaagcaaag
gctgtaagtattatggctatgaatcctaataatggagaaatactagctttagtaaataaa
ccagattataatccaaataatccttgggtagaaggaaaaacttcagaagaactacaaaaa
atgtggaggaatagagctattagtgatacttttgaacctggatctatttttaaagttata
acttccactgcagctttggaagaaaatttagtatcggaagaagacagattttattgtaaa
ggttctactgtaataggtaaaagaactgtaaggtgttggaaatctggtggacatggtagt
caaacctttgtggaaatattaaaaaattcttgtaacgtaggatttacagagttaggtaaa
aaaattggaaaagaaaatttatataaatatataaggaaatttggatttggagaaaagaca
ggagtagatgttccaggagaggcattgggaattattaaaaatcctgcaaatatttctgaa
ttggatttagctactatatcttttggacaaacaaatacagtttctatagtacagtattta
agtgcttttaatgctgttgctaatggagggaaacttataaaacctcattttctaaaagaa
attcaaagctacgatgaagaaacaggtgttaaaaaaacagagaaaaaatttgaagactat
aatgaaaaaaagatattaagtgaagaaaaaactgctcaacttaggggatatcttgaaaag
gtaatttctgaaggaggaggaaaaaaagcttttatagaaggatatactattggaggtaaa
actggaacagctcaaaaggttatagatggtaaatatggacctcaaaaatatatatcttcc
tttgcaggaatggctccagcggagaaacctcaaataacactatttgtgtctatagatgag
ccagatccatctaattattatgcaggacaaattgcagctccagtagcacaacaagtattt
aatgatatatttaattacctttctataaagggaaatgcatctgactcagaaattgctgaa
agtttaaagaaagatatagtaatacctgaaattaggggacttaaaaaagcagaagcgtta
aaaatattaaaagaacaaaaattagattataatatagatgaaaagggagactatataaca
gatatgaatccaaagcctggatatactgttaaagaaggaagcaaaatagtactttacact
ggaaaaacatccaattataatagagtagtggcagttccagatataagaggatatactata
gagaatgcgtctaaattacttaatagtcttggtttaaaaataacctatagtggaagtgga
ctaatttatgaacaaagtgttaaagaggacgaggaagttccaaagggaactacaatacat
gttaaattagaagaagttatagattaa
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