Clostridium cochlearium: SAMEA4530647_1531
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Entry
SAMEA4530647_1531 CDS
T06756
Symbol
nfo
Name
(GenBank) endonuclease IV
KO
K01151
deoxyribonuclease IV [EC:
3.1.21.2
]
Organism
ccoh
Clostridium cochlearium
Pathway
ccoh03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ccoh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SAMEA4530647_1531 (nfo)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccoh03400
]
SAMEA4530647_1531 (nfo)
Enzymes [BR:
ccoh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.21 Endodeoxyribonucleases producing 5'-phosphomonoesters
3.1.21.2 deoxyribonuclease IV
SAMEA4530647_1531 (nfo)
DNA repair and recombination proteins [BR:
ccoh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
SAMEA4530647_1531 (nfo)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP_endonuc_2
Motif
Other DBs
NCBI-ProteinID:
SNV82026
LinkDB
All DBs
Position
1:1494307..1495125
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AA seq
272 aa
AA seq
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MDKLIFGISGLPIGDGNSKFNYKTGIEYLNSIGLDAMELPFVRSVNITDKNKEEVLNAKI
ENDIYLSAHGSYFINLNAVELEKQEKSMERIIKGAEGLQKVKGRSLIFHPGFYLKDTKEK
TFNTIKENLEKLPYFGVDYRLETTGKPTQFGSLEEIVALCKDIKHCKPCIDFSHLHARGN
GALKNYDDFANILDYMHKHLGYEALEDMHIHISGINYGEKGERNHLPFLESDFNYKDCMK
AFKSFDIKGCIICESPILEKDALLLKEYYKAL
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
ttggataaattgatttttggaatttctggtcttcctataggagatggaaattcaaaattt
aattataaaactggtatagaatatttaaattccataggtttagatgccatggaacttccc
tttgttagatctgttaatattacagataagaataaagaagaggttttaaatgctaaaata
gaaaatgatatttatctttctgctcatggttcttattttataaacttaaatgctgtggaa
ttagaaaagcaagaaaagtctatggaaagaattataaaaggagctgagggattacaaaag
gtaaaaggtagaagcttaatttttcatcctggattttatctaaaagatacaaaagaaaag
acttttaatactataaaagaaaatcttgaaaagctaccttactttggagtggactacaga
ttagaaaccacaggaaaacctactcaatttggttctttagaggaaattgtagcactttgc
aaggatattaaacactgcaagccctgcatagatttctctcatttgcacgcaagaggtaac
ggtgcattaaaaaattatgatgactttgcaaatattttagattatatgcacaaacattta
ggatatgaagccttagaagacatgcatatacatatatctggaataaactatggagaaaaa
ggtgaaagaaatcatcttcccttcctagaaagcgactttaattataaagattgcatgaaa
gctttcaaaagctttgatattaaaggttgcattatatgtgaaagtcctattttagaaaaa
gacgctcttttgcttaaagaatactacaaggctttatag
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