Clostridium cochlearium: SAMEA4530647_1613
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Entry
SAMEA4530647_1613 CDS
T06756
Symbol
truA_1
Name
(GenBank) tRNA pseudouridine synthase A
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
ccoh
Clostridium cochlearium
Brite
KEGG Orthology (KO) [BR:
ccoh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ccoh03016
]
SAMEA4530647_1613 (truA_1)
Enzymes [BR:
ccoh01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
SAMEA4530647_1613 (truA_1)
Transfer RNA biogenesis [BR:
ccoh03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
SAMEA4530647_1613 (truA_1)
Prokaryotic type
SAMEA4530647_1613 (truA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-ProteinID:
SNV82986
LinkDB
All DBs
Position
1:1577015..1577752
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AA seq
245 aa
AA seq
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MRNLKMILEYDGTRYKGWQKQKKDVLTIQDKIETVLSKMTGEDIQVIGCGRTDSGVHAEN
YVANFHTNCDFTVDYMLDYLYEFLPEDIVVKTMKDTSERFHARYNVKSKTYVYRINNNKF
RSVFNKKYSYHNNEKLNVSTMKEATEFLIGTHDFQSFTRLKSNSKSTIRTIKYINITENQ
GMIDIEINGNGFLLNMVRIIAGALLEVGKGNIKPIDIEKMLNEKKRANASLILPARGLCL
KDVQY
NT seq
738 nt
NT seq
+upstream
nt +downstream
nt
atgagaaatttaaaaatgatattagaatacgatggaactagatataaaggatggcaaaaa
caaaagaaagatgttttaaccatacaagataaaatagaaactgtattgtctaaaatgact
ggagaagatattcaagtaataggttgcggaagaactgactcaggtgttcatgccgaaaat
tatgtagcaaacttccatactaattgtgatttcactgtggattatatgttagattatcta
tatgaatttttacctgaagatatagtagtaaaaactatgaaggataccagtgaaagattc
catgcaagatataatgtaaaatcaaaaacctatgtttatagaataaataataataaattt
agaagtgtatttaataaaaagtattcttaccacaataatgaaaaacttaatgtaagtaca
atgaaagaagctacagaatttttaattggaactcatgactttcaaagctttactcgatta
aaatctaactctaaatcaactattagaactattaaatacataaatataacagaaaatcaa
ggtatgatagatatagaaattaacggaaatggttttttgttaaatatggtaagaattatt
gcaggggctcttttagaagtaggtaagggaaacatcaaaccaatagatattgagaaaatg
ttaaatgaaaagaaaagagcaaatgctagtctaatccttccagcaaggggattatgctta
aaggatgttcaatattaa
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