Clostridium cochlearium: SAMEA4530647_1758
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Entry
SAMEA4530647_1758 CDS
T06756
Symbol
cshA_2
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ccoh
Clostridium cochlearium
Pathway
ccoh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccoh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAMEA4530647_1758 (cshA_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccoh03019
]
SAMEA4530647_1758 (cshA_2)
03009 Ribosome biogenesis [BR:
ccoh03009
]
SAMEA4530647_1758 (cshA_2)
Enzymes [BR:
ccoh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SAMEA4530647_1758 (cshA_2)
Messenger RNA biogenesis [BR:
ccoh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SAMEA4530647_1758 (cshA_2)
Ribosome biogenesis [BR:
ccoh03009
]
Prokaryotic type
rRNA helicases
SAMEA4530647_1758 (cshA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
RGS
CMS1
NDK
AAA_30
Motif
Other DBs
NCBI-ProteinID:
SNV84512
LinkDB
All DBs
Position
1:1729986..1731560
Genome browser
AA seq
524 aa
AA seq
DB search
MKNLKFNNLGLNEDILKAIEDMGFETPSKIQAEVIPVVLQGFDVIGQAQTGTGKTLAFGA
PVLNSISNESKNVKSIILAPTRELAIQVYKELTTIAKYTKFKLLPVYGGDSIERQIRSLK
KGIDIVIGTPGRVQDLINRGALNLSYIEFLVLDEADEMLNMGFVDDIENILKSCNENRRT
LLFSATMPNEIKKIAKKYMKKDAKHVAIAQDSMTVSSVEQFYYEVKPKNKFESLCKVLSV
DEPTRAIIFCKTKKGVDELVASMKEKGFNAEGMHGDMTQNHRLNTLNKFKERSIPFLVAT
DVAARGIDVKDTSHVINYDLPQDTESYVHRIGRTGRANKKGTAYTFVTPKEFSSLKKIQK
ISKSKISKRQLPTMDDVLKAKFDSILNDIEETLSKDDYNTFIPLVKDLENKFDLTNVTAA
LMNILYNDEISYNYDDNNVDSDLLDTTRIFLNVGRKDRLNPKILLEFLDNNANINKSQVG
SIDILDKFTFVDIASDRVGDLMDNCIDKTLCRRKLNVEVAKKSK
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatttaaaatttaataatttaggacttaatgaagatatacttaaagcaattgaa
gatatggggtttgaaactccttctaaaattcaagctgaagttatacccgttgttttacaa
ggattcgatgttataggtcaggctcaaacaggtactggtaagactcttgcctttggtgct
cctgttttaaatagcattagtaatgaatctaaaaatgttaaaagcataatactagctcct
acaagggaactcgctattcaggtatataaagagcttacaactatagcaaaatacactaaa
ttcaaattactacctgtctacggaggagattctatagaaagacaaataagaagtttgaaa
aaaggaatagacattgtaataggaactcctggaagggttcaagatttaattaatagaggt
gctcttaatctatcctatattgaatttcttgttcttgacgaagcagatgaaatgcttaat
atgggctttgtagatgacatagaaaatatactaaaaagttgtaatgaaaatagacgtact
ttattattttctgcaacaatgccaaatgaaataaagaaaatagctaaaaaatatatgaaa
aaagatgctaaacatgtggctatagctcaagattctatgacagtatcatctgtagaacaa
ttttattacgaagttaaaccaaaaaataaatttgaatctttatgtaaagtactttctgtt
gatgaaccaacaagagctataatattttgtaaaaccaaaaaaggtgtagatgaattagta
gcatctatgaaagaaaaaggatttaatgcagagggaatgcatggtgacatgacacaaaat
catagattaaatactttaaataagttcaaagaaagaagcataccttttcttgtagccact
gatgtagctgcaaggggcatagatgttaaagatacaagtcacgttataaactatgatttg
cctcaagatacagaatcttatgttcatagaattggtagaactggaagagccaataaaaaa
ggtacagcttatacttttgttacacctaaagaatttagctctcttaaaaaaatacaaaaa
attagtaaaagtaaaatcagtaaaagacaattgcctactatggacgacgtattgaaagct
aaatttgatagtattttaaatgatatcgaagaaactttatcaaaagatgactataatact
tttatacctttagttaaagatctagaaaataaatttgatctaacaaatgttaccgcagct
ttaatgaacatattatataatgacgaaatttcatataattatgatgacaataatgtagac
tctgatttattagatactactagaatatttttaaatgtaggtcgtaaagataggcttaat
cctaaaattttgttagagtttttagataataatgctaatataaataaaagccaagttgga
agtatagatatactagacaaatttacttttgttgatatagcatcagatcgtgtcggcgat
ttaatggataactgcatagataaaactctatgtagaagaaaattaaacgtagaagtagct
aaaaaatccaaataa
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