Clostridium cochlearium: SAMEA4530647_1808
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Entry
SAMEA4530647_1808 CDS
T06756
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
ccoh
Clostridium cochlearium
Pathway
ccoh03030
DNA replication
ccoh03430
Mismatch repair
ccoh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ccoh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SAMEA4530647_1808 (holA)
03430 Mismatch repair
SAMEA4530647_1808 (holA)
03440 Homologous recombination
SAMEA4530647_1808 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccoh03032
]
SAMEA4530647_1808 (holA)
03400 DNA repair and recombination proteins [BR:
ccoh03400
]
SAMEA4530647_1808 (holA)
Enzymes [BR:
ccoh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SAMEA4530647_1808 (holA)
DNA replication proteins [BR:
ccoh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SAMEA4530647_1808 (holA)
DNA repair and recombination proteins [BR:
ccoh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SAMEA4530647_1808 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta_C
DNA_pol3_delta
DNA_pol3_gamma3
Motif
Other DBs
NCBI-ProteinID:
SNV84993
LinkDB
All DBs
Position
1:complement(1778358..1779392)
Genome browser
AA seq
344 aa
AA seq
DB search
MIDLRTYREEIKKNDIKNCYIFYSSDEDMIKENIRLIENKLIKEKLINKDFIDLNFAKFD
GNNLEEFDEVINACETLPFMSDKKIVLVYRANFLGKNKKNEGVYLNFKNYIENIPESTIL
ILYYVFKEKRERVENKVLKLSKKCDIIEIKDLKGRDLEKKVKELFEEKNKKIGVVELKLF
CSNLPNNMGIIEKEVEKLCCYTLGREITKQDIGDMFPPKEEEDIFVLVDKIGDKRVKEAI
DRFNELLHIGENVFNILYMIERQFNLIYQVSQYVKEGKTIEQISRIIRLPNFICTKLVGQ
SKKFTETQIKNAINKCLETEKILKSTSTNKKVEMEMLIIQTIAM
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atgattgatttaagaacatatagagaagaaataaaaaaaaatgatattaaaaattgttat
atattttatagttcagatgaagatatgattaaagaaaatataagacttatagaaaataaa
ttaataaaagaaaaattaattaataaagattttattgacttaaattttgcaaagtttgat
ggaaataatttagaggaatttgatgaagttataaatgcctgtgaaacccttccttttatg
tccgataaaaaaattgtgttagtatatagagctaattttttagggaaaaataaaaaaaat
gaaggagtgtatttaaattttaaaaactacatagaaaatatacctgaaagtacaatttta
atattatactatgtatttaaagaaaaaagagagagggtagaaaataaagttttaaaacta
agtaaaaaatgcgacattatagaaattaaagatttaaagggaagagatctagaaaaaaaa
gttaaagaactatttgaagaaaaaaataaaaaaattggtgttgtggaattaaaattattt
tgctctaatcttcctaataatatgggaataatagaaaaggaagtggagaagctctgctgt
tatacattaggacgagagattacaaaacaggatataggagatatgtttcctccaaaagag
gaagaggatatatttgtccttgtggataaaataggagataaaagagtaaaagaagccata
gataggtttaatgaattgctacacataggtgagaatgtttttaatatattgtatatgata
gagagacagtttaatttaatatatcaggtttctcaatatgtaaaggaaggtaaaaccata
gaacaaattagtagaataattagattacctaattttatatgtacaaaattagtagggcag
agtaaaaagtttacagaaactcaaattaaaaatgctataaataaatgtttagaaacggaa
aaaatattaaaaagcacttctactaataaaaaagtggagatggaaatgttgataatccaa
actatagctatgtaa
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