Clostridium cochlearium: SAMEA4530647_1866
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Entry
SAMEA4530647_1866 CDS
T06756
Symbol
polA_2
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
ccoh
Clostridium cochlearium
Pathway
ccoh03030
DNA replication
ccoh03410
Base excision repair
ccoh03420
Nucleotide excision repair
ccoh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ccoh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SAMEA4530647_1866 (polA_2)
03410 Base excision repair
SAMEA4530647_1866 (polA_2)
03420 Nucleotide excision repair
SAMEA4530647_1866 (polA_2)
03440 Homologous recombination
SAMEA4530647_1866 (polA_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccoh03032
]
SAMEA4530647_1866 (polA_2)
03400 DNA repair and recombination proteins [BR:
ccoh03400
]
SAMEA4530647_1866 (polA_2)
Enzymes [BR:
ccoh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SAMEA4530647_1866 (polA_2)
DNA replication proteins [BR:
ccoh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SAMEA4530647_1866 (polA_2)
DNA repair and recombination proteins [BR:
ccoh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
SAMEA4530647_1866 (polA_2)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SAMEA4530647_1866 (polA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_polI_exo1
DNA_pol_A_exo1
HHH_5
HHH_2
KH_KRR1_2nd
Motif
Other DBs
NCBI-ProteinID:
SNV85527
LinkDB
All DBs
Position
1:complement(1830242..1832875)
Genome browser
AA seq
877 aa
AA seq
DB search
MLQKDKLVILDGNSLMNRAFYALPPLTNHEGIHTNGIYGFINMLLKIKEDIKPDYIVCTF
DKSAPTFRHEAYKDYKAGRKKMPEELAEQFPILKDLLSKLAIEIFEIEGFEADDLIGTLS
KFAEEKNIEVYIVTGDKDALQLASDTTKILFTKRGITEREIYDRQKVIDEMGVTPQEFID
VKGLMGDPSDNIPGVPGIGEKTALKLIKEYGSVENVLNNIENLSGKKLKENLIENSEQAI
FSKKLATIMRNVPIDMDLEKIKSKEEYDINGVREIFTKLQFKTLMDKILKGENTKDLENE
EDVIYEEIHNIDGLFKLCYTIENSEDEKIYVNFKTTDTSLYSKIALEKLYILFKGSCYVI
NIKDIIEENKDKIVEFLKNIFEKNGSRIVGYDVKVPAIALKKLSVEFNIASFDLKIAAYL
IDSSKSDYGLPILIQEYLNKIVKDDEEKEIREILLLEKLYVNLKEQITNLQMEKLYYEVE
LPLAFVLADMEVEGFKVDGKMLEDIGDKLQGEIEKVQKEIYELADEEFNVNSPKQLGKIL
FEKLDLPVIKKTKTGYSTNAQVLEALEDKHPIINKISYYRQLTKLYSTYVEGLKNVIDED
GRIHSSFNQTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVFVPNYENSIILSADYSQIEL
RVLAHIADDRNLIDAFKHHADIHTKTASEVFKVPIEEVTETMRGNAKAVNFGIVYGIGDF
SLAKDLKISRKEAKGYIDTYFERYPNVKKYMDETIDKAKKDMYVTTILNRRRFIPEIGNR
NKIVKALGERLAMNTPIQGSAADIIKMAMVKVFNALKERNLKSKIILQVHDELILNVYKD
ELKEIESIVKDCMENVLPLSVPLEVDINKGENWYDAK
NT seq
2634 nt
NT seq
+upstream
nt +downstream
nt
atgttacaaaaggataaattagtaatattagatggtaatagcttaatgaatagggctttt
tatgcattaccaccattaactaatcatgaaggaattcatactaatgggatatatggcttt
ataaatatgcttttaaaaattaaagaggatataaaaccagactatatagtttgtacattc
gataaaagtgcacctacatttaggcatgaggcttataaggattataaagcaggaagaaag
aaaatgccagaagaattggcagagcaattccctatattaaaggatttactttctaaattg
gcaatagaaatatttgagatagagggtttcgaagctgatgatttaataggtactttatct
aaatttgcagaagaaaaaaatatagaagtttacatagtaactggagataaagatgctctt
caattggcgtcagatactacaaagattttatttactaaaagaggtataactgaaagagaa
atatatgatagacaaaaggttatagatgaaatgggtgttactccacaagaatttatagat
gtaaaagggcttatgggagatccttcagacaatataccaggagttcctggtataggagaa
aaaactgcactaaaacttataaaagaatatggtagtgtagaaaatgtattaaataacata
gaaaatttaagtgggaaaaaattaaaggaaaatttaatagaaaatagcgaacaggctata
tttagtaaaaagttagccactattatgagaaatgttcctatagacatggatttggaaaaa
attaaatctaaagaagaatatgatataaatggagtaagagaaatatttacaaagcttcaa
tttaaaactttaatggataaaatacttaaaggtgaaaatactaaagatttagaaaatgaa
gaagatgtaatatatgaagaaattcataatatagatggtttatttaaactatgctataca
atagaaaatagtgaagatgaaaaaatatatgtgaattttaaaactacagatacaagttta
tattctaaaatagctttagaaaaattatatattctatttaaaggaagttgctatgtaatt
aatataaaagatataattgaagaaaataaggataaaatcgtggaatttctgaaaaatatt
tttgaaaaaaatggttctagaatagtaggttatgatgtaaaagtaccagctatagctctt
aaaaaattaagtgtggaattcaatatagcttcttttgatttaaaaatagcggcatatctt
atagattcttcaaagtcagactatggtttacctatattaatacaagagtatttaaataaa
attgtaaaagacgatgaagaaaaagaaataagagaaattttgttattagaaaaattatat
gtaaatttaaaagaacaaattactaatttacaaatggaaaaactttattatgaagtagaa
ttacctttagcctttgtcctagcagatatggaagtggaaggttttaaggttgatggaaaa
atgctagaagatataggagataaacttcaaggtgaaatagaaaaagttcaaaaggaaata
tatgaattagcagatgaagagtttaatgtaaattcaccaaaacaactgggaaaaatttta
tttgaaaaattggatttacctgttataaagaaaactaaaacaggatactctaccaatgca
caagttttagaagcgttagaagataagcatcctattataaataaaataagctattacaga
cagcttacaaaactgtattcaacttatgtagaaggactaaagaatgtaatagatgaagat
ggaagaatacattcaagctttaaccaaactgtaacaactacaggaagactttcaagtaca
gaacctaatcttcaaaatatacctataaaatatgaaatgggcagggaaataagaaaggtt
tttgtacctaattatgaaaatagcattatactatcagcagattattcccaaatagagtta
agggttcttgctcatatagcagatgataggaatttaatagatgcttttaagcatcatgca
gatatacatacaaaaactgcatctgaagtttttaaagtacctatagaagaagtaacggaa
actatgagaggaaatgctaaggcagtaaattttggaatagtatatggcataggagatttt
agtttagctaaagatttaaaaatttctagaaaagaagcaaagggatatatagatacttat
tttgaaagatatcctaatgtaaaaaaatacatggatgaaactatagataaagccaaaaag
gatatgtatgtgactaccatattaaataggagaaggtttataccagaaataggcaataga
aataaaatagtaaaagccttaggagaaaggttagctatgaatacacctattcagggaagt
gctgctgatataataaaaatggctatggttaaagtctttaatgcacttaaagaaagaaat
ttaaaaagtaaaattatattacaagttcacgatgagcttatattaaatgtttataaagat
gaattaaaagagattgagagtatagttaaagattgcatggaaaatgtattaccccttagt
gtaccacttgaagttgacataaataaaggagaaaattggtatgatgctaagtga
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